Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2492 ATGTTCTGGAAGCTCGCCTCTATCTCTTCCTCCTCTCCCGTGGAGGCAATATTGGACAAGGAGAACTTCACTTTGGAAGAACTtcttgatgaagatgaaataatCCAAGAATGCAAGGCCTTAAACAGTCGTCTCATCAACTTtCTGAGAGATAGAGCTCAGGTTGAGCAATTGCTACACTACATCATTGAAGAACCACCGGAGGATGCTGAAAACAAACGGATCTTCAAGTTTCCATTCATTGCCTGTGAGATCTTTACATGTgaaattgatgtaattttgAAGACCTTGGTGGATGAAGAAGAGCTCATGAACTTATTATTCTCCTTCTTGGAGCCTGATCGTTCTCATAGTATGTTACTGGCCGGGTACTTTAGCAAGGTTGTTATTTGTCTAATGATACGAAAGACAATACCACTTATGAATTATGTTCAAGCCCATCAGCATGTTTTTCGCCAACTGGTAGATTTGATAGGCATTACATCCATTATGGAGGTTTTGGTTCGATTAGTAGGTGCTGATGACCATGTATATCCCAATTTTATAGATGTGATTCAATGGTTGGCTGAGGGCAACCTGCTAGAGATGATTGTTGATAAACTAAGTCCATCTAGTCCTCCTGAAGTTCATGCTAATGTAGCTGAAACATTGTGTACCATAACTCGAGTTGCATCATCTACTCTAGCAATTAAGCTTTCAAGTCCAAGGTTTTGTGCTGCAAggctttacttttttttaatatatgcctgtaaattgattattaaattttttttactttgcaGTTTTGTTGCAAAAATTTTGGGTTATGCATTGGAAGATTCACAATCAAAGTCTAGCCTTGTCAACTCACTTTCGGTGTGTATTTCTCTGTTGGATCCCAAAAAATCAGCTGTTTCATCTCCACTTTTTCCTTCATTCCGAAGTCAAAACATGTATGAGCCACCAATTCCTGTAAACCCAGATACTATTGGTGCAATGCTACCTAAACTTGGTGAATTGCTTGTGCTTTTGGATGTGTCATCTGATAACAAGGTATTGCCTACAACATATGGCGAATTGAGACCTCCACTTGGCAAGCAGCGATTAAAgATTGTGGAGTTCATTGCAGTACTTTTAAAAACTGGAAATGAAGTGGCAGAAAAAGAATTGGCCAACTCAGGAACCATTCGACGAGTCATTGATCTTTTCTTTGAGTATCCATACAATAACTCATTACACCATCATGTAGAAAGTATTGTATCATCATGTCTGGAGAGCAAATCTGATGCCATTATTGATCATATTCTTCGAGATTGTGATTTAGTTGGAAGGTTTCTTCAAGTAGATAAACATTGTCTTCTTTCTGCTGAAAGCAATCAGCCCACAGTACTTGCTGCTGGAAAACGGGGAACACGGGTAGGAAACATTGGACATATTactcaaattttcaataaacttgTGCACTTGGCTCATAACCAAAGCCACATTCTTGCATGTCTTCAGGAGAATAGTGAGTGGAATGAGTGGCAAGCTGCAGTTCTTCAGCAGCGTAATGTGGTTGAGAATGTTCACCGCTGGGCTTGTGGGTAA 1569 0.3767 MFWKLASISSSSPVEAILDKENFTLEELLDEDEIIQECKALNSRLINFLRDRAQVEQLLHYIIEEPPEDAENKRIFKFPFIACEIFTCEIDVILKTLVDEEELMNLLFSFLEPDRSHSMLLAGYFSKVVICLMIRKTIPLMNYVQAHQHVFRQLVDLIGITSIMEVLVRLVGADDHVYPNFIDVIQWLAEGNLLEMIVDKLSPSSPPEVHANVAETLCTITRVASSTLAIKLSSPRFCAARLYFFLIYACKLIIKFFLLCSFVAKILGYALEDSQSKSSLVNSLSVCISLLDPKKSAVSSPLFPSFRSQNMYEPPIPVNPDTIGAMLPKLGELLVLLDVSSDNKVLPTTYGELRPPLGKQRLKIVEFIAVLLKTGNEVAEKELANSGTIRRVIDLFFEYPYNNSLHHHVESIVSSCLESKSDAIIDHILRDCDLVGRFLQVDKHCLLSAESNQPTVLAAGKRGTRVGNIGHITQIFNKLVHLAHNQSHILACLQENSEWNEWQAAVLQQRNVVENVHRWACG 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2492 522 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 6 REGULATORY SUBUNIT 2-LIKE ISOFORM X1 1 239 - -
Ssu3g2492 522 Pfam SIT4 phosphatase-associated protein 382 515 IPR007587 GO:0019903|GO:0043666
Ssu3g2492 522 Pfam SIT4 phosphatase-associated protein 131 381 IPR007587 GO:0019903|GO:0043666
Ssu3g2492 522 PANTHER SIT4 YEAST -ASSOCIATING PROTEIN-RELATED 260 522 IPR007587 GO:0019903|GO:0043666
Ssu3g2492 522 PANTHER SIT4 YEAST -ASSOCIATING PROTEIN-RELATED 1 239 IPR007587 GO:0019903|GO:0043666
Ssu3g2492 522 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 6 REGULATORY SUBUNIT 2-LIKE ISOFORM X1 260 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2492 Ssu-Chr3 77269239 77275102 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2492 K15501 - gmx:100790416 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2492 3 77269239 77275102 Ssu3g2492 3 77269239 77275102 ECH
Ssu8g0574 8 9248372 9257849 Ssu3g2492 3 77269239 77275102 PCT