LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g2488	ATGGGTTTTGGTCGAAATTCGACATCGAGAAGTGGAGATTACTTGGAAGGGATGCTTAATGACTATGTTGGAGGAAGGGCCAAACTGAAGGCTCAGAAGAGTGTTCCCACAAAGTTTGTGGCAGCGCTCACATGCCTTCAGTTTTTCTTTGCAGTTTATGCAACATTCCTATTGTATTACATGGGGCCTTCCATTGATTTACGAAGCAAGCCAGAGTTCACATGGGCTACAAAAATTGCCCAACAATGGAAGCAACTTATGATCACACCCCACGTTGTTGGTCACTACCAAGAAGCTGCTTCCTCTCTCATCAAGGAAGATGTTCTACCAACAACTCCATCCCAAGTGTGCGAGAATGAGAAGATAGACTTCATGCAAAAGAAGTCCAATGATGTCCAAATGATCAAGATAAAGAGAGAGCTCTACGAGGAGGTGTTGAACTTCCAAAGCAAAACCATTGGCACTGAGACTCTCCAAGAGCTAATGGCAATGAAATCCAAGTGGGACTTGAAGGGTCCAAACAGGCCAAAAATCACAGTGTTGCTAAACCACTTCAAGAGAAAGACACTTTGTGCTCAGCTTGATTCTTTGCTCCAACAAACCCTTCCTTTCCATCATGCTTGGGTGCTTTCATTTGGGAGCCCCAATGAGGCCTCATTAAGGAGAATTGTGGACACCTATAACGATTCAAGAATCAGCTTCATAAGCTCAAGCTATGATTTCAAGTACTATGGAAGGTTCCAAATGGCTCTTCAGACTAAAGCTGATCTTGTGTATGTTGTTGATGATGACATGATTCCTGGAAGGAAGATGTTGCAGATTTTGGCACACGTGGCTGGGACAGACAAGTACAAGAATTCTGTTTTGGGGAGCATTGGAAGGATATTGCCCTTTAGACAGAAGGATTTCACGTTTCCAAGTTACAGAAAATTTCGGTCTAAGGAGGCAGGGTTGTACTTGCCTGATCCTGCTTATGATATCACTGTTGATAAAATTGTGCAAGTGGATTTTCTTTCTAGTTCATGGTTTCTCTCTGCTGATCTCGTCAAGACACTCTTCATTGAGACACCTTTTACCTTCTCAACTGGCGAAGATCTCCACCTCAGCTATCAGCTTCAGAAGTACAGAAATGCTGGCTCGTTTGTTCTTCCAGTAGACCCTAAGGACAAGGAAACTTGGGGTGACAGTGAACACAGGCTTGCATATGTGTCTGAAACCACAGTGATTTTCAAGGACATAGTTCAAGTCAGAGATGATCAATGGTGGAAAGCACTTTCCACAGGCTATGTGACTCAGTGGGCTGCAATGAACCCTCAAAAGGTTGATGCACTCTTTTATGCTCACTCAGTTGATGAAGTGAAAGTGCTTGCACCACTTCTTGAAAAGTTCAGGTCCACAGTTGGCAAAAAGGCCTACATTGTTGTCACTGGAGGCAGTTTCTGCCCCTGTGAAGATGCTGCAACGGCTCTCAAATGGCCTGCACTGGCCTGCAAAGAACGTCGGTTTAAGATTTTTGATTTGGCCGTTGGAGCACTTTCTGGGGTGTCAAACTCTGAGGCACCAGTGATACAAGCAGTGTACACTAGCATGAAGGGTTTGATCAAAATTCACAATCCCAGTGTAGTGATCAGTGTGGCTGACATTGACCCTCATGTCAGAAAAGCTCTCAAGATGGCATCAGAAACTAATTCAAATGGCACCACATTGGTTCTCTTACCCAGGGCCTCAGTGTCTCAAGTTCTTTGGATGGCTGATCTGCGTTCAACAGCATTGCCAAATTGGAATCGGATGAGGATTTCTGTGAACATCATCACCCAAAACAGAGCCAATTCACTAGCAAGGCTTCTCAAATCTCTCGGCAATGCCTACTATCTTGGAGATGAAATTCCCATTACCTTCAACATGGATAGCAAGGTAGATGAGGCAACTATAAGACTAGTTGGTTCATTCGAGTGGCCTCATGGGCCCAAAACCCTGAGAAGGAGAATCATCCAAGGTGGGCTCATCCGGGCTGTGAGTGAGAGTTGGTATCCATCTTCTGATGATGACTTTGGGCTCCTACTTGAAGATGACATTGAAGTCTCCCCTTACTATTACCTATGGATCAAATATGCACTCATGGCTTACCACTATGACCCCCAAGTCTCTCTCCCTCAGCTCTCCTCCATTTCCCTCTACTCTCCAAGACTAGTTGAAGTTGTCAAAGAGAGGCCCAAATGGAATGCCACAGAATTCTTCAAACAAATCCACCCCAACACACCTTACCTTCACCAACTACCTTGCAGCTGGGGGGCAGTGTTCTTCCCCAAGCACTGGAGAGAGTTCTACGTGTACATGAACATGAGGTTCACTGAGGATGCCAAGGCCAACCCAGTTCAAATTCCAAAGTCTAGAACAAACGGGTGGCAAGCTTCATGGAAGAAGTTCCTCATAGACATGATGTACCTTAGAGGGTATGTTAGTCTCTACCCAAATTTCCCACAACAGGCAAGCTTCTCAACCAACCATATGGAACCAGGGGCACATATTAGTGCAAAAGATAATGTGGTTAAGCATAACAAACAGGACTTTGAGGTGCCACTATTGAAAGAAGACTTTAGAAACTTGTTGCCAGGAATGAAAATGCCCCCAGCCTCAAGGCTTCCATCTCTAAACCTCTTCAACCAGCCAGTTTCTCTAAAGGGTCTCAAAGCTGCTGGAGCTAAGTTGGGCCAGGATGTGCTTAGATGTGACAATGCCACTGAGGTTGTTGCTGTTGATCAAGATACGGGCCTTCCTGACACCTGCTCCAAATTCTGA	2799	0.4505	MGFGRNSTSRSGDYLEGMLNDYVGGRAKLKAQKSVPTKFVAALTCLQFFFAVYATFLLYYMGPSIDLRSKPEFTWATKIAQQWKQLMITPHVVGHYQEAASSLIKEDVLPTTPSQVCENEKIDFMQKKSNDVQMIKIKRELYEEVLNFQSKTIGTETLQELMAMKSKWDLKGPNRPKITVLLNHFKRKTLCAQLDSLLQQTLPFHHAWVLSFGSPNEASLRRIVDTYNDSRISFISSSYDFKYYGRFQMALQTKADLVYVVDDDMIPGRKMLQILAHVAGTDKYKNSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDITVDKIVQVDFLSSSWFLSADLVKTLFIETPFTFSTGEDLHLSYQLQKYRNAGSFVLPVDPKDKETWGDSEHRLAYVSETTVIFKDIVQVRDDQWWKALSTGYVTQWAAMNPQKVDALFYAHSVDEVKVLAPLLEKFRSTVGKKAYIVVTGGSFCPCEDAATALKWPALACKERRFKIFDLAVGALSGVSNSEAPVIQAVYTSMKGLIKIHNPSVVISVADIDPHVRKALKMASETNSNGTTLVLLPRASVSQVLWMADLRSTALPNWNRMRISVNIITQNRANSLARLLKSLGNAYYLGDEIPITFNMDSKVDEATIRLVGSFEWPHGPKTLRRRIIQGGLIRAVSESWYPSSDDDFGLLLEDDIEVSPYYYLWIKYALMAYHYDPQVSLPQLSSISLYSPRLVEVVKERPKWNATEFFKQIHPNTPYLHQLPCSWGAVFFPKHWREFYVYMNMRFTEDAKANPVQIPKSRTNGWQASWKKFLIDMMYLRGYVSLYPNFPQQASFSTNHMEPGAHISAKDNVVKHNKQDFEVPLLKEDFRNLLPGMKMPPASRLPSLNLFNQPVSLKGLKAAGAKLGQDVLRCDNATEVVAVDQDTGLPDTCSKF	932

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g2488	932	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	598	847	IPR029044	-
	Ssu3g2488	932	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	175	376	IPR029044	-
	Ssu3g2488	932	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	160	385	IPR029044	-
	Ssu3g2488	932	PANTHER	-	27	932	-	-
	Ssu3g2488	932	PANTHER	OSJNBA0004B13.7 PROTEIN	27	932	-	-
	Ssu3g2488	932	CDD	Glyco_tranf_GTA_type	188	279	-	-
	Ssu3g2488	932	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	596	788	IPR029044	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g2488	-		-	gmx:100790938	1795.02

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu3g2488	3	77183722	77187732	Ssu3g2488	3	77183722	77187732	ECH