Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2485 ATGTCCGGCAAAGGTGTAGCGACTCCGGCGACATACTCGCCGTCGCCGACGACCGATAAGAAGAAACCGCCGCTGTTCAAGGAAGATTGGGTTCGACCCGATGGCCGCGGTTTCCACCAGTGCAGACCTGCGTTTTTCAGGACTGGTGCTGTGAATGCTGCTTCTGGATCTGCTTATGCTGAGTTTGGAAATACCAAGGTCATTGTATCTGTATTTGGGCCAAGAGAGAGCAAGAAGGCAATGATGTACAGTGATATAGGGCGTTTGAATTGCAATGTCAGCTTTACAACGTTTGCTACTCCAGTTCGTGGGCAGGGTTCAGACCACAAAGAGTACAGTGTGATGCTTCATAAGGCTTTGGAGGGTGCAATAATACTGGAAACTTTCCCCAAGACAACTGTGGACGTTTTTGCATTGGTGCTGGAATCTAGTGGCAGTGATCTCCCAGTTGTTATATCATGTGCTAGCCTTGCCCTGGCAGATGCTGGAATAATGATGTATGATCTTGTTACCTCAGTTTCTGTGTCATGTTTTAGTAAGAACCTTGTCATTGATCCTATTTTGGAGGAGGAAAACTGCCAAGATGGTAGCTTAATGATTACTTGCATGCCTTCTCGGTATGAAATCACCCAACTCACCATTACTGGGGAATGGTCCACTCCAAAAATTAATGAGGGAATGCAGCTGTGCTTGGATGCTTGTGCAAAGCTTGCGAAGATAATGAGGTCGTGTTTGAAAGAAGCTGCTTCGGATTCCCAGAATAGAATGGCAGTTCTAAATTAA 783 0.4623 MSGKGVATPATYSPSPTTDKKKPPLFKEDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCNVSFTTFATPVRGQGSDHKEYSVMLHKALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVTSVSVSCFSKNLVIDPILEEENCQDGSLMITCMPSRYEITQLTITGEWSTPKINEGMQLCLDACAKLAKIMRSCLKEAASDSQNRMAVLN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2485 260 MobiDBLite consensus disorder prediction 1 25 - -
Ssu3g2485 260 Pfam 3' exoribonuclease family, domain 2 168 229 IPR015847 -
Ssu3g2485 260 Pfam 3' exoribonuclease family, domain 1 40 164 IPR001247 -
Ssu3g2485 260 PANTHER EXOSOME COMPLEX COMPONENT MTR3 16 249 - -
Ssu3g2485 260 CDD RNase_PH_MTR3 41 247 - -
Ssu3g2485 260 PANTHER EXOSOME COMPLEX COMPONENT 16 249 - -
Ssu3g2485 260 SUPERFAMILY Ribonuclease PH domain 2-like 166 250 IPR036345 -
Ssu3g2485 260 SUPERFAMILY Ribosomal protein S5 domain 2-like 27 192 IPR020568 -
Ssu3g2485 260 MobiDBLite consensus disorder prediction 1 18 - -
Ssu3g2485 260 Gene3D - 19 257 IPR027408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2485 Ssu-Chr3 77027705 77033339 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2485 K12587 - gmx:100819105 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2485 3 77027705 77033339 Ssu3g2485 3 77027705 77033339 ECH