Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2480 ATGGAAAAGCTTGCTAAGCAGGTCCTGATTTGCAGTTTATTAGCGGCACATGTTTTGCTATCATGCCCAGTAATAATGTCTCAAGAAGTTGAGGACGAGAGCGAGTTTAATTATGATGTGAAGAGTGAGATAGGACCATTTCATTGGGGAGACATTAAACCCGAATGGAGTCTATGCAAAAATGGATCCATGCAATCGCCGATTGATTTGTTGAATGAGAGGGTTCAAATAGTATCCCATTTGGGAACGCTTCAGATGAACTACCGACCATCCAATGCAACTCTTAAGAATAGGGGCCATGATATCAAGCTGGAATGGCTTGCGGGCACAAGCTATCTACAAATTAATGGAACTCAGTATGTACTTAAACAGTTCCATTGGCATTCTCCCTCTGAACACACCATAGATGGCAGAAGGTTGGATTTAGAGTTACACATGGTGCACGAAACTCCATCAGGACAAACTGCAGTGATTGGCATATTGTATAAAGCTGGAACGGCGCCAGATCCTTTTTTGTCATTGTTAACGAATCACTTAAAGGCCATTTCTAATAGTACGGGAgcagaaagagaggtgggtgtAATGGATCCTAGGCTGGTTAGAATAGGCATAAGCGGAACACAGTATTACAGATATATTGGTTCGCTGACTACTCCTCCGTGCACTGAGAATATTGCTTGGACCATGCTTAGAGAGGTGAGATCCGTTTCAAGGGAGCAAATCCGATTGCTTCGAGATGCCATTCACGATGATTCTGATGCTAATGCAAGACCATTGCAGCCAATAAACAACCGCTTAGTGCAGCTCAATAAACCGAAAGATCAACACTAA 831 0.4164 MEKLAKQVLICSLLAAHVLLSCPVIMSQEVEDESEFNYDVKSEIGPFHWGDIKPEWSLCKNGSMQSPIDLLNERVQIVSHLGTLQMNYRPSNATLKNRGHDIKLEWLAGTSYLQINGTQYVLKQFHWHSPSEHTIDGRRLDLELHMVHETPSGQTAVIGILYKAGTAPDPFLSLLTNHLKAISNSTGAEREVGVMDPRLVRIGISGTQYYRYIGSLTTPPCTENIAWTMLREVRSVSREQIRLLRDAIHDDSDANARPLQPINNRLVQLNKPKDQH 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2480 276 SMART Carb_anhydrase_2a 38 271 IPR001148 -
Ssu3g2480 276 CDD alpha_CA_prokaryotic_like 45 269 IPR041891 -
Ssu3g2480 276 ProSiteProfiles Alpha-carbonic anhydrases profile. 34 271 IPR001148 -
Ssu3g2480 276 SUPERFAMILY Carbonic anhydrase 35 267 IPR036398 -
Ssu3g2480 276 PANTHER BIFUNCTIONAL MONODEHYDROASCORBATE REDUCTASE AND CARBONIC ANHYDRASE NECTARIN-3 23 276 - -
Ssu3g2480 276 PANTHER CARBONIC ANHYDRASE 23 276 IPR023561 GO:0004089|GO:0008270
Ssu3g2480 276 Gene3D Alpha carbonic anhydrase 32 275 IPR036398 -
Ssu3g2480 276 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Ssu3g2480 276 Pfam Eukaryotic-type carbonic anhydrase 45 270 IPR001148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2480 Ssu-Chr3 76785010 76787201 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2480 K01674 - gmx:100811978 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2480 3 76785010 76787201 Ssu3g2480 3 76785010 76787201 ECH
Ssu3g2480 3 76785010 76787201 Ssu8g0589 8 9503437 9504383 PCT