Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2467 ATGGCCTCAGCCAACGCTCTCTCTTCAGCCTCCATTTTGCGCTCTTCCAACCGCCAGAGCCTGACCCGAACTGTGAACCACAACGGAAGAGTGAATTACCGGCAACCGAACCGCCGTTTCGCGGTGAAAGCCAATGCGAAGGAGATTGCGTTCGACCAGAATTCCCGGGCCGCGATTCAGGCCGGCATTGACAAGCTCACCGACGCCGTTGGGCTCACCCTTGGGCCCAGAGggagGAACGTTGTGTTAGACGAGTTTGGAAGTCCTAAAGTGGTGAACGATGGTGTGACCATTGCTCGCGCAATTGAACTTCCCGATGCTATGGAAAATGCTGGCGCAGCTCTCATTAGAGAGGTTGCTAGTAAGACTAATGACTCTGCGGGTGATGGGACGACCACGGCTTCGGTTCTTGCTCGCGAGATAATTAAGCTTGGGCTTCTCAGTGTGACTTCTGGAGCTAACCCTGTGTCTCTCAAGAGAGGGATTGATAAAACTGTGCAGGGTTTGGTGGAGGAGTTGGAGAAGAAGGCCAGGCCTGTTAAAGGCGGAGATGATATCaaagCTGTTGCGTCTATTTCTGCTGGGAATGATGAGTTGATTGGGCTAATGATTGCTGAGGCAATTGACAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCGTCTTCGTTTGAGACGACGGTTGAAGTGGAAGAAGGAATGGAGATTGATAGAGGGTATATCTCGCCTCAGTTTGTTACAAACCCTGAGAAGTCAATTGTTGAATTTGAGAATGCGAGAGTGTTGATTACGGATCAGAAGATTTCAGCAATAAAAGATATTATACCACTGTTGGAGAAAACCACTCAACTGAGAGCTCCTTTGCTTATTATTGCTGAAGATGTCACTGGTGAGGCTTTGGCAACCCTTGTTGTGAATAAGCTGCGTGGTATCCTTAATGTTGCTGCCATCAAAGCTCCTGGCTTTGGCGAGCGGCGAAAAGCCCTCCTTCAAGACATTGCTATATTGACTGGTGCTGAGTTCCAAGCTAGTGATCTGGGGCTGCTTGTTGAAAACACCTCAGTGGAGCAGCTTGGTTTGGCTCGGAAAGTGACCATCTCCAAGGATTCTACCACTTTCATTGCTGATGCCGCATCAAAGGATGAGCTGCAAGCCAGGGTTGCTCAGTTAAAGAAGGAGTTGTCAGAGACAGACTCAATCTATGATTCTCAGAAACTGGCTGAGAGGATAGCTAAATTGTCTGGTGGTGTTGCAGTCATCAAGGTTGGTGCGGCTACTGAGACTGAACTTGAGGATCGTAAGCTCCGAATTGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTACCTGGTGGAGGTACTGCGCTGGTTCATCTCTCCACTCATGTCCCAGCAATCAAGGATAAGCTTGAGGATGCAGATGAGAGGCTTGGAGCAGACATTGTGCAAAAGGCACTGGTATCTCCTGCAGCATTGATTGCTCAAAATGCTGGAATAGAAGGTGAAGTTGTTGTGGAGAAAATAAAGAATGGTGAATGGGAGGTTGGTTACAATGCCATGGTAGACAGGTATGAGAATTTAGTGGAGGCTGGAGTTATCGACCCTGCCAAGGTAACAAGATGTGCGTTGCAGAATGCTGCTTCAGTTGCCGGAATGGTGTTGACTACGCAGGCCATTGTGGTGGAAAAACCTAAGCCCAAGGCACCTGTAGCTGCTGCCCCACAAGGCCTTACTATTTGA 1755 0.4855 MASANALSSASILRSSNRQSLTRTVNHNGRVNYRQPNRRFAVKANAKEIAFDQNSRAAIQAGIDKLTDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVQGLVEELEKKARPVKGGDDIKAVASISAGNDELIGLMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKVTISKDSTTFIADAASKDELQARVAQLKKELSETDSIYDSQKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTHVPAIKDKLEDADERLGADIVQKALVSPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMVDRYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPVAAAPQGLTI 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2467 584 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 582 - -
Ssu3g2467 584 PANTHER BNAA04G16190D PROTEIN 1 582 - -
Ssu3g2467 584 SUPERFAMILY GroEL equatorial domain-like 54 565 IPR027413 -
Ssu3g2467 584 Hamap Chaperonin GroEL [groEL]. 45 582 IPR001844 GO:0042026|GO:0140662
Ssu3g2467 584 Coils Coil 381 401 - -
Ssu3g2467 584 TIGRFAM GroEL: chaperonin GroL 46 570 IPR001844 GO:0042026|GO:0140662
Ssu3g2467 584 Gene3D GroEL 234 415 IPR027409 -
Ssu3g2467 584 Gene3D - 179 452 IPR027410 -
Ssu3g2467 584 ProSitePatterns Chaperonins cpn60 signature. 447 458 IPR018370 GO:0005524|GO:0006457
Ssu3g2467 584 CDD GroEL 47 567 IPR001844 GO:0042026|GO:0140662
Ssu3g2467 584 Pfam TCP-1/cpn60 chaperonin family 66 569 IPR002423 GO:0005524
Ssu3g2467 584 PRINTS 60kDa chaperonin signature 125 152 IPR001844 GO:0042026|GO:0140662
Ssu3g2467 584 PRINTS 60kDa chaperonin signature 70 96 IPR001844 GO:0042026|GO:0140662
Ssu3g2467 584 PRINTS 60kDa chaperonin signature 440 461 IPR001844 GO:0042026|GO:0140662
Ssu3g2467 584 PRINTS 60kDa chaperonin signature 310 333 IPR001844 GO:0042026|GO:0140662
Ssu3g2467 584 PRINTS 60kDa chaperonin signature 392 417 IPR001844 GO:0042026|GO:0140662
Ssu3g2467 584 SUPERFAMILY GroEL apical domain-like 226 418 IPR027409 -
Ssu3g2467 584 Gene3D - 49 566 IPR027413 -
Ssu3g2467 584 SUPERFAMILY GroEL-intermediate domain like 179 244 IPR027410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2467 Ssu-Chr3 76587595 76591969 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2467 - - gmx:100806471 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2467 3 76587595 76591969 Ssu3g2467 3 76587595 76591969 ECH