Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2466 ATGAATCTATCTGCTGCAGGGTGCGCGATGGGCGAGGTGGGGAAGATACTCTACATTGTGGTGCTCGACGACGCCGACAGGAAAGAGTCCTTCCGCTACACGCGCTCCGTTCTCCAGAGCACGCTCCAGCTCATGGGATGCAAAGCGCGTCACGCCTTCAAGATCAGCCAAAGAGTTTTTGAACTCACAAGGAAAGAGAATTCTAGTGATATTTTGCAGCCAGAAGTAGAGGCTTTATCAGGTTTTGATGCTTTCAAGAGGAATTTTGTGAAGAAAGGTGGCCATTGTGCTGATTGTAGAATTAAGAGTGTACCATTTGAGTTGTACAAAAGGCGCACATCTGCATTTGTTCAGAGAGAAACTTTTCTAGATATTGTCTGTGAAGCTCTGGCAGAGTACAAGTATGTGGGTCCTAACCAGAGAGCAGACTTGGTATTAGCCTGCAGGATCCGGGAACGGAAAGAGTCTGTGACAGTGTTATTGTGTGGTACTAGTGGCTGTGGCAAGTCCACATTGTCTGCATTGCTGGGAAGTAGGTTGGGAATCACAACAGTGGTATCGACTGATTCTATTAGGCACATGATGAGAAGTTTTGCTGATGAGAAGGAAAACCCCTTGTTATGGGCTTCTACATACCATGCAGGAGAGTGTTTGGACCCTGTTGCTGTTGCAGAAGCAAAGGCCAGAAGGAAAGCAAAAAAGCTGGCTGGTGTGTCACATTCGCTTTCCAAGGATGAAGTAATCGAGGGCCACAATTCTAGCAAATCTGACGTTAGGATGTTGGAGACGAGCTCTGGTCCTACTGAACTGCCAAGTCCAAAACAAATGGCTGTTGAAGGATTTAAGGCACAGAGTGAGATGGTGATTGACAGTCTTGATAGGCTAATCACTGCATGGGAAGAACGAAAAGAGTCCGTTGTTGTCGAGGGTGTTCACTTGAGCCTTAACTTTGTTATGGGGCTCATGAAGAAACATCCTTCAATCATACCATTCATGATACACATTACAAATGAGGACAAGCACTTGGAAAGATTTGCCGTACGTGCGAAGTATATGACACTGGACCCAGCTAAAAACAAGTATGTAAAGTATATCAGAAACATCAGAACAATCCAGGATTATCTCTGCAAGCGTGCTGAAAAGCATTTAGTTCCCAAAATAAACAATACTAATGTTGACAAGAGTGTAGCAGCCATCCATGCAACTGTCTTCAGCTGTCTTCGAAGGCGTGAAGTTGGGGAACAACTATATGATCCTATAAGAAATACTGTAACAGTTGTTTATGAGGAATATAGAAATCAATGTGCAGCCAATTCTTTGAGCTCGAAAGGGATGTTTCAATTGATCCAGAGAAAAGGTTCTTCAAGGAATCTGATGGCTCTTGTTAATACTGATGGGTCTGTGGCAAAGGCTTGGCCTGTTAATTTAGTTGACAATAATGGGAAGCCGGTATGGGGCTATGGACCAGAGAATGGAATTGGAGATCCAATGTATGGTCCCTTAAGAATTGGCAAGGCAGAACCTGTAAATCTTCAGTTTGGTTTTTATGGGATCAGTGCATGGCCAAGTGATGGTGGCACTAGTCTTGCTGGAAGTGTTGATGAGTCTAGAGCCGATGGGACTGATACCGGTAGTAGATATCTATCCTCTTGCTCTAGCTCACCAAGGATGTCGGATGTTGCTGCAAAGGAGCTCAAGGAAGACTTCTCAGTGCATGGTAGTGATGAAGAGATTGACGATCAACCAGAGGTGGGCAGTGATGAGGATTTCAGTGATGATGGCGACAAACATGTCCATGAAGAGGTAGGATCAGTTGACGAGGAATCAACAAAATCTGATGAAGAGTACGAAGATCTTGCAATGCAAGACTTGCCGGAAAATGGGTATTGGTCAGATGATGATGAGTTTAGGAGCAAGGTTGGTGCTGTTACCGGGGAGGTAGGAACTAAAATGCATGGAGGGAACCAGTATGGTCGAAACCTGGATCTTTTCCTTAGAAGTAGGAGTGAGCCAGTGCCAATGGCAGTGGCAGTTCCAGAGCCCCTATGCTCTTATTATTCTTCTTTGCTCGTTGAAAGGAGTGAGAGGAAAGCCAAATTAAGAACTCGTTCTCTTAGTATTCCAGCATTAGGAAAGCATAATTCAGCAATCAATGATCCCATCCTTTCTGGTGCTCCTCAGAGGTAG 2187 0.4476 MNLSAAGCAMGEVGKILYIVVLDDADRKESFRYTRSVLQSTLQLMGCKARHAFKISQRVFELTRKENSSDILQPEVEALSGFDAFKRNFVKKGGHCADCRIKSVPFELYKRRTSAFVQRETFLDIVCEALAEYKYVGPNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVVSTDSIRHMMRSFADEKENPLLWASTYHAGECLDPVAVAEAKARRKAKKLAGVSHSLSKDEVIEGHNSSKSDVRMLETSSGPTELPSPKQMAVEGFKAQSEMVIDSLDRLITAWEERKESVVVEGVHLSLNFVMGLMKKHPSIIPFMIHITNEDKHLERFAVRAKYMTLDPAKNKYVKYIRNIRTIQDYLCKRAEKHLVPKINNTNVDKSVAAIHATVFSCLRRREVGEQLYDPIRNTVTVVYEEYRNQCAANSLSSKGMFQLIQRKGSSRNLMALVNTDGSVAKAWPVNLVDNNGKPVWGYGPENGIGDPMYGPLRIGKAEPVNLQFGFYGISAWPSDGGTSLAGSVDESRADGTDTGSRYLSSCSSSPRMSDVAAKELKEDFSVHGSDEEIDDQPEVGSDEDFSDDGDKHVHEEVGSVDEESTKSDEEYEDLAMQDLPENGYWSDDDEFRSKVGAVTGEVGTKMHGGNQYGRNLDLFLRSRSEPVPMAVAVPEPLCSYYSSLLVERSERKAKLRTRSLSIPALGKHNSAINDPILSGAPQR 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2466 728 MobiDBLite consensus disorder prediction 526 554 - -
Ssu3g2466 728 PANTHER P-LOOP NTPASE DOMAIN-CONTAINING PROTEIN LPA1 HOMOLOG 1 10 724 - -
Ssu3g2466 728 PANTHER P-LOOP NTPASE DOMAIN-CONTAINING PROTEIN LPA1 HOMOLOG 2 10 724 - -
Ssu3g2466 728 Gene3D - 153 411 IPR027417 -
Ssu3g2466 728 MobiDBLite consensus disorder prediction 590 606 - -
Ssu3g2466 728 MobiDBLite consensus disorder prediction 569 614 - -
Ssu3g2466 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 409 IPR027417 -
Ssu3g2466 728 MobiDBLite consensus disorder prediction 246 273 - -
Ssu3g2466 728 MobiDBLite consensus disorder prediction 257 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2466 Ssu-Chr3 76533861 76538938 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2466 - - gmx:100776549 1249.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2466 3 76533861 76538938 Ssu3g2466 3 76533861 76538938 ECH