Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2465 ATGGCATCACGCTCCTGCACCATTCCTATTGCAATGTGTCGTATTCCGCTTATGTCTTATATCTTTCGGGACTGGTACTTCTGGAGCGAGCTGTTTAACGAGACCATTATTTGCAAATATCCAGTTTTGGTTATTGATGAGAATTTTAATGCTAGTTTCATTCAGCTAAATGCTGATTTAAAGTGTACCATTATGGATGAAGCAACTGTGGTGGGATTTGAAGTTCCAAAATCTCCTGATTCCAGTTACAATAATGTCTACCCTGGAAATGAAGATGAGGCAAGGGATCCACCCATGGTCCCTTCACATTTGCAACACACTTTGCTCAATTATCCTGCTAATAGAGACACTGCAGGAACTCTTCCGTTGCCCCAGAATGTGATTCTAAATCATCTTTACATCGAGAATAGAGAGTCCCCAAGATCTGTGGTGGCGTTGGGATTCACTCATCGTTTCCGCTCTAAATATGTTACAGTCGTGCTTTACAAACCAGTCCAAAGAAGGGGAAATACAAGCATTTAA 522 0.4138 MASRSCTIPIAMCRIPLMSYIFRDWYFWSELFNETIICKYPVLVIDENFNASFIQLNADLKCTIMDEATVVGFEVPKSPDSSYNNVYPGNEDEARDPPMVPSHLQHTLLNYPANRDTAGTLPLPQNVILNHLYIENRESPRSVVALGFTHRFRSKYVTVVLYKPVQRRGNTSI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2465 173 SMART AMPKBI_2 76 165 IPR006828 GO:0005515
Ssu3g2465 173 SUPERFAMILY AMPKBI-like 69 165 IPR037256 -
Ssu3g2465 173 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 94 164 IPR006828 GO:0005515
Ssu3g2465 173 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 55 171 IPR043554 -
Ssu3g2465 173 Gene3D - 70 165 - -
Ssu3g2465 173 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-3 55 171 IPR030067 GO:0009744|GO:0043562
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2465 Ssu-Chr3 76441418 76445828 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2465 - - gmx:102661902 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2465 3 76441418 76445828 Ssu3g2465 3 76441418 76445828 ECH