Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2460 ATGGCAGAGCTCAATGTAAAAAGTAGCAGCAAAAAGAGGGTTGTAGGTGGCATTTTGAAGTTCAAGAGTGTGTTGGAAAAGCTTCAGAAGAGTCTCGTATTGCGCAGACATAAATCAAGTTCTTCCTGTTATGAAGAAGGAGATGACACAACGTGTGTGCCAGAGGATGTGAAAGAAGGACATTTTGTTGTGATTGCAAAGGATAAGGAGGAGGCAAAGAGGAGATTCGTGGTGCCATTGAGCTGCTTAAACAACCCAACATTTTTTAGGCTATTGGAGGAAGCAGCAGAAGAGTATGGGTTTGATCAACATGGTGCACTAACCATTCCTTGCAGGCCTAGTGAACTTGAGATGCTATTGTCTCAGCAATGGAAAGAAAGAGGGAGATTCTGA 393 0.43 MAELNVKSSSKKRVVGGILKFKSVLEKLQKSLVLRRHKSSSSCYEEGDDTTCVPEDVKEGHFVVIAKDKEEAKRRFVVPLSCLNNPTFFRLLEEAAEEYGFDQHGALTIPCRPSELEMLLSQQWKERGRF 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2460 130 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 24 126 IPR003676 GO:0009733
Ssu3g2460 130 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR32-LIKE 24 126 - -
Ssu3g2460 130 Pfam Auxin responsive protein 30 121 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2460 Ssu-Chr3 76372367 76372759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2460 11 121 Calmodulin-binding Proteins AT4G34750 36.036 8.33e-13 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2460 - K14488 gmx:102667608 173.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2460 3 76372367 76372759 Ssu3g2460 3 76372367 76372759 ECH
Ssu8g0608 8 9868676 9869077 Ssu3g2460 3 76372367 76372759 PCT