Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2440 ATGAGCACGCGAGGGGAGAAAATGGCGAAGAAATCCATCGGAAGCTTAATGCGGAAGAAGCTCTCTGATATCACCAACGTTCACTCTCAACAACTCGACACTCTTCCCTCCGATAACAATTCCATTCAACAACTCCTTAAGGAAAGAACGGCGTTGATCCAGCTCCTTGCggaaagaaaTAAAATGATTGAAGCGAGTGGCGCGGAGCTGCAGAGGCTGCGAGCCGATGTGAAGAAGCTGCAACTCCAAAACTGGAATCTCGCTCAGTCCAATAGCCACATGTTAGCGGAACTTAACTTGGGGAGAGAAAGGATTAAAACGCTGCAGCATGAAATTTTGTGGAGGGCTGCTTTGCTTAAAGGAAAGACCATGGACGTGCAGGAAAAAGTGGAGATTGACTACGTAAAGAATCCTACATCATCACAGTTACAGGAAGGAGATGAAAAAGCAAGGCAGCCTTCCCCTAAAGCTAGCAAGGATGAACAACACAACTATATGAATAGAAGACGCATGAGGAGTAAATCTACTGGTCCTTGTACTGCTTCCAAGAATACAAGCAAAGACAAGGTCAAAGACAATAGGAGACGTTTGAGGAGACATTCTACTACGTTCAAAACCCATGAACATGAACCTCTAGAAAATTTGTTCGAGTTAGAGGATGCTACATATCTTGTTACTCAATCTGGATCTCCAAATTCAAAAAGTGAAAGAGGAGAAAGCTCTGTTTTAAGGAATGAAGCTCCAAGGTGTTCTTTTGGAAGACCCTTGCGAAGAGCAGTTCAGAAGGTTCAATCTTACAAGGAGATTCCTCTAAATGTCAAGATGCGAAGACTAGAATAA 840 0.431 MSTRGEKMAKKSIGSLMRKKLSDITNVHSQQLDTLPSDNNSIQQLLKERTALIQLLAERNKMIEASGAELQRLRADVKKLQLQNWNLAQSNSHMLAELNLGRERIKTLQHEILWRAALLKGKTMDVQEKVEIDYVKNPTSSQLQEGDEKARQPSPKASKDEQHNYMNRRRMRSKSTGPCTASKNTSKDKVKDNRRRLRRHSTTFKTHEHEPLENLFELEDATYLVTQSGSPNSKSERGESSVLRNEAPRCSFGRPLRRAVQKVQSYKEIPLNVKMRRLE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2440 279 Pfam Shugoshin C terminus 253 277 IPR011515 GO:0000775|GO:0005634|GO:0045132
Ssu3g2440 279 MobiDBLite consensus disorder prediction 149 168 - -
Ssu3g2440 279 PANTHER SHUGOSHIN 4 279 - -
Ssu3g2440 279 MobiDBLite consensus disorder prediction 137 207 - -
Ssu3g2440 279 Coils Coil 63 90 - -
Ssu3g2440 279 MobiDBLite consensus disorder prediction 227 247 - -
Ssu3g2440 279 PANTHER SHUGOSHIN 2 4 279 IPR044693 GO:0000775|GO:0034090|GO:0045144
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2440 Ssu-Chr3 76040895 76043730 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2440 - - gmx:100801538 448.743