Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2429 ATGGCACTTCCACACTCTGTCTCTGCCTTAGCAACCACAGTCACACTTTCATCCCCAATAAGCAAACCCCAGAATCTGAATCCCCTTCCCTTTTTCTCGAACCAGAATTCACAAGTTTCCACGAAACAAACACGACCCAGAAGCAGAAGAAACCTTTCCCTAACCCCTGCACGCGTTGCCGCGCCACCCTCAACAATTGAAACCGATCAATCATTCCCAGAAACCGAAGAGGGGGAAACTGGGGAAGAGTTTAACGACGAGAGCTCTTCGTCTAAGTTCTCTTGGAGGGATCACTGGTACCCCCGTTTCGTTAATCGAAGATCTGAACCCTCTCTTGCCCACACCGAAGGAAGGATCGATGAAGATGGGAAGTTGCAGTGTTCTTATCATGGGTGGTCTTTTGATGGTTGTGGATCTTGTGTAAAGATTCCTCAGGCTTCAACTGAAGGCCCCGAAGCACGTGCTATTCGATCTCCTAAAGCGTGTGCCACTAGGTTCCCTACCATGGTGTCTCAGGGCCTGCTCTTTGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCAAATGCCTCCAAGCCTCCaatGTTGCCTGATGACTATGACAAACCGGAGTTTGCTACGGTCAACATTCAGCGTGATCTGTTCTATGGTTATGATACTCTCATGGAGAATGTATCTGACCCTTCTCACATTGATTTTGCTCATCACAAGGTTACAGGAAGGAGAGACAGAGCCAAGCCTCTGCCATTCAAAATGGATGCTCGTGGTCCGTGGGGCTTCTCTGGAGCTAATGAAGGGAACCCACAGATCAGTGCCAAATTTGTTGCACCATGTTATTATATGAACAAGATTGAGATTGATACCAAACTCCCTGTAGCTGGTGATCAGAAATGGGTAGTATGGATATGTTCCTTCAATGTCCCCATGGCACCTGGTAAGACTCGCTCCATTGTTTGCAGTGCTCGAAACTTCTTCCAGTTCACAGTGCCAGGGCCTGCCTGGTGGCAAGTCGTTCCTAGATGGTATGAGCATTGGACTTCAAACAAGGTATATGATGGAGACATGATTGTCCTTCAAGGCCAAGAGAAAATTTTCCTTTCAGAAACCAAGGAAGGCGGTGACGTTAACAAACAGTACACAAACATCACCTTCACCCCAACACAGGCAGATCGCTTTGTCTTGGCATTTCGAAATTGGCTGAGGCGACACGGCGATGGCCAACCAGAATGGTTTGGCAGCAGCAGCGACCAACCGTGGCCGTCAACTGTTTTATCAAAACGTCAGaTGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGGAGCATATGAGGGATTCCAAACGTGGCAGAAAATCCTAATTGGTGCAACAGTTGTGTTTTGTGCAACATCAGGGATCCCATCAGATATCCAGTTGCGTGTACTTTTGGCTGGACTCGCAATTGTCAGCGCTGCCTTCGCTTTTGCGCTAAGCCAACTCCAAAAGAATTTTGAATTCGTCGATTACGTGCACGCCGAAATTGATTAA 1536 0.474 MALPHSVSALATTVTLSSPISKPQNLNPLPFFSNQNSQVSTKQTRPRSRRNLSLTPARVAAPPSTIETDQSFPETEEGETGEEFNDESSSSKFSWRDHWYPRFVNRRSEPSLAHTEGRIDEDGKLQCSYHGWSFDGCGSCVKIPQASTEGPEARAIRSPKACATRFPTMVSQGLLFVWPDENGWEKANASKPPMLPDDYDKPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKMDARGPWGFSGANEGNPQISAKFVAPCYYMNKIEIDTKLPVAGDQKWVVWICSFNVPMAPGKTRSIVCSARNFFQFTVPGPAWWQVVPRWYEHWTSNKVYDGDMIVLQGQEKIFLSETKEGGDVNKQYTNITFTPTQADRFVLAFRNWLRRHGDGQPEWFGSSSDQPWPSTVLSKRQMLDRFEQHTLKCSSCKGAYEGFQTWQKILIGATVVFCATSGIPSDIQLRVLLAGLAIVSAAFAFALSQLQKNFEFVDYVHAEID 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2429 511 PANTHER PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC 115 511 - -
Ssu3g2429 511 PANTHER PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC 34 101 - -
Ssu3g2429 511 MobiDBLite consensus disorder prediction 27 51 - -
Ssu3g2429 511 SUPERFAMILY Bet v1-like 172 407 - -
Ssu3g2429 511 Pfam Pheophorbide a oxygenase 273 368 IPR013626 GO:0010277
Ssu3g2429 511 Gene3D - 203 406 - -
Ssu3g2429 511 Gene3D - 109 202 IPR036922 GO:0051537
Ssu3g2429 511 SUPERFAMILY ISP domain 116 181 IPR036922 GO:0051537
Ssu3g2429 511 Pfam Rieske [2Fe-2S] domain 115 147 IPR017941 GO:0051537
Ssu3g2429 511 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 115 177 IPR017941 GO:0051537
Ssu3g2429 511 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 115 511 - -
Ssu3g2429 511 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 34 101 - -
Ssu3g2429 511 MobiDBLite consensus disorder prediction 27 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2429 Ssu-Chr3 75859463 75864060 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2429 K13071 - gmx:100812162 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2429 3 75859463 75864060 Ssu3g2429 3 75859463 75864060 ECH