Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2420 ATGGCTCCAAAACGTGCTGAGAAGATGGTAGTCAGATCCACCAAGAAAGTTGTGGAATCAAGTGTGCAGGTTTCGTTTGTAGGAAGCAGCAGCAAAAGACTAACCCGGGGAAACAAAGATCTTCAAGCAACTGATCAGGAAGAAGTAGGTGGCCAAGAGCATGTGTTGATCATTCCCATACAAGAGGTGACTCCTACCTCTGCCATCACTGCTGAAAACAAAGCTGATGGGGGAGTCCAAAATCAAAAGGAAGAGCAAAAGGGAGAGAATGAGGAAGTCAAGGAGAAGAAGGCCAAGAGCCCAAGAGGGCATAAcggtaaagagaaaaaaaggaggagaaaaagaGGGAGGAGAAGTGGAGAAGGGTACCAGAGGTATGTGTATAGGGTGTTGAAGCAAGTGCACCCTGAAATGGGAATTTCTTCTAAATGCATGACTATTCTGAATAACTTGATGAATGACATGTTTGAGAGGCTGGCTTATGAGGCTGCCAAGCTGAAGGACTACACAGGGCACATGACATTGTCGTCAAGAGAGATTCAAGGAGCAGTGAAGCTGGTTTTGCCAGGAGAGCTTGGGAAGCATGCAATTGCTGAAGGTGTTAAAGCTGTGAACACCTACACGTCCTATCATGCCTGA 639 0.4444 MAPKRAEKMVVRSTKKVVESSVQVSFVGSSSKRLTRGNKDLQATDQEEVGGQEHVLIIPIQEVTPTSAITAENKADGGVQNQKEEQKGENEEVKEKKAKSPRGHNGKEKKRRRKRGRRSGEGYQRYVYRVLKQVHPEMGISSKCMTILNNLMNDMFERLAYEAAKLKDYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGVKAVNTYTSYHA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2420 212 SMART h2b3 113 209 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2420 212 Coils Coil 79 99 - -
Ssu3g2420 212 PANTHER HISTONE H2B 1 210 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2420 212 PRINTS Histone H2B signature 164 181 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2420 212 PRINTS Histone H2B signature 123 141 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2420 212 PRINTS Histone H2B signature 194 207 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2420 212 PRINTS Histone H2B signature 142 162 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2420 212 PRINTS Histone H2B signature 181 194 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu3g2420 212 MobiDBLite consensus disorder prediction 78 102 - -
Ssu3g2420 212 MobiDBLite consensus disorder prediction 71 119 - -
Ssu3g2420 212 Pfam Core histone H2A/H2B/H3/H4 80 186 IPR007125 GO:0003677
Ssu3g2420 212 MobiDBLite consensus disorder prediction 26 50 - -
Ssu3g2420 212 Gene3D Histone, subunit A 77 210 IPR009072 GO:0046982
Ssu3g2420 212 PANTHER HISTONE H2B.2 1 210 - -
Ssu3g2420 212 SUPERFAMILY Histone-fold 94 209 IPR009072 GO:0046982
Ssu3g2420 212 MobiDBLite consensus disorder prediction 103 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2420 Ssu-Chr3 75736593 75737231 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2420 K11252 - gmx:100786873 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2420 3 75736593 75737231 Ssu3g2420 3 75736593 75737231 ECH