Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2417 ATGGAAAAGCTCCCTCATTTTGTCTCCATCCTCCTATTCCTTGCTCTACTATTTCACGGAGGAAAGGTATTAGCTTTGAAGAGCCAAGACGGATCAGAGGAATGGGGATACGTACAAGTCAGACCCAAAGCGCACATGTTTTGGTGGCTTTACAAAAGTCCCTATAGAGTGGAAGATCCCTCTAAGCCATGGCCAATTATTCTCTGGTTGCAAGGAGGACCTGGTGCTTCAGGAGTTGGGATTGGAAATTTTGAGGAGGTTGGGCCGTTGGACACAAGCTTGAAGCCACGGAATTCCACATGGTTAAGAAAAGCGGATCTCTTGTTTGTGGACAATCCAGTTGGAACCGGGTACAGTTTTGTGGAGGACAAGAAGCTTTTTGTGAAAACAGATGACGAAGCAGCCACTGACTTGACTACATTGTTGATTGAGTTATTCAATGGGGATGAGAAACTGCAAAAGAGCCCTCTGTTCATAGTGGCAGAGTCATATGGTGGAAAATTTGCTGTCACTCTTGGGTTATCCGCTGTGAAAGCTATAGAAGATGGGAAATTGAAGCTTAAACTTGGAGGTGTGGCATTAGGAGACAGTTGGATCTCGCCAGAAGATTTTGTGTTCTCATGGGGTCCTCTCCTCAAAGACCTCTCACGACTTGACGATAATGGACTGCAAAAATCAAACGGTATAGCTCAGAGGATCAAGCAGCAACTTGAggatggtaaatttgttgatgcCACAGACTCATGGAGTGAACTTGAGTCTGTGATTTCCGCTAGCAGTAACAATGTGGACTTCTACAATTTATTGGAGGATGAGGGAAGTAGTGACTTATCAGCAATGGAGTTGgggttatataaaaaaatatcaatgaagAGGTACTCCAGGTATCTTACTTCCATGAGGTCAAGGTCATCTCCCGGTGGTGATGATGATCTTGATGAGTTACTAAACGGTGtcataaagaaaaagttaaagatCATCCCTGAGAATGTCACATGGGGAGGGCAGTCTGGTGATGTTTTTACAAACCTTGCAGGTGATTTTATGAAACCAAGAATTAATGAGGTTGATGAACTGCTGGCAAGAGGGGTCAATGTGACTGTGTACAATGGACAAGTTGATCTGATTTGTGCAACCAAGGGGACTGAAGCTTGGATTAATAAACTGAAGTGGGAAGGGCTTAAAAAATTCTTGGGGAAAGACAGAACACCCCTTTACTGTGGAAGTGACAACTCGACAACCAAAGGTTTTGTTAGGTCATACAAAAACCTACACTTCTATTGGATCCTCAAAGCAGGCCATTTTcttAAATGGGATGGTGACGGTGACTACGTCATTACTTTTGTGGGAAACATTGGTGTCAGACTCCTAGTTATAAGATCCAATGATACTGTCTCTTCAGAAATATCAGATATGTGTCTATGTTTCAGTTCTTTGTCTGATAAGAGTACagtaatttatactaatttgttTGCTTGCTGCAGGTACCCACCGATCAGCCATGCGTGGCACTAG 1515 0.4145 MEKLPHFVSILLFLALLFHGGKVLALKSQDGSEEWGYVQVRPKAHMFWWLYKSPYRVEDPSKPWPIILWLQGGPGASGVGIGNFEEVGPLDTSLKPRNSTWLRKADLLFVDNPVGTGYSFVEDKKLFVKTDDEAATDLTTLLIELFNGDEKLQKSPLFIVAESYGGKFAVTLGLSAVKAIEDGKLKLKLGGVALGDSWISPEDFVFSWGPLLKDLSRLDDNGLQKSNGIAQRIKQQLEDGKFVDATDSWSELESVISASSNNVDFYNLLEDEGSSDLSAMELGLYKKISMKRYSRYLTSMRSRSSPGGDDDLDELLNGVIKKKLKIIPENVTWGGQSGDVFTNLAGDFMKPRINEVDELLARGVNVTVYNGQVDLICATKGTEAWINKLKWEGLKKFLGKDRTPLYCGSDNSTTKGFVRSYKNLHFYWILKAGHFLKWDGDGDYVITFVGNIGVRLLVIRSNDTVSSEISDMCLCFSSLSDKSTVIYTNLFACCRYPPISHAWH 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2417 504 Pfam Serine carboxypeptidase 31 435 IPR001563 GO:0004185|GO:0006508
Ssu3g2417 504 PANTHER CARBOXYPEPTIDASE 7 439 - -
Ssu3g2417 504 ProSitePatterns Serine carboxypeptidases, serine active site. 159 166 IPR018202 GO:0004185
Ssu3g2417 504 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 7 439 IPR001563 GO:0004185|GO:0006508
Ssu3g2417 504 SUPERFAMILY alpha/beta-Hydrolases 20 436 IPR029058 -
Ssu3g2417 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 97 109 IPR001563 GO:0004185|GO:0006508
Ssu3g2417 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 120 IPR001563 GO:0004185|GO:0006508
Ssu3g2417 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Ssu3g2417 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 145 170 IPR001563 GO:0004185|GO:0006508
Ssu3g2417 504 Gene3D alpha/beta hydrolase 19 443 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2417 Ssu-Chr3 75656892 75663174 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2417 K09646 - gmx:100787940 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2417 3 75656892 75663174 Ssu3g2417 3 75656892 75663174 ECH