Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2416 ATGCAGCCGAATTTGTTTCCCTTTGGAAGTGTGCTGGGGAATCCGTTCATTTTCAATGGCGATTTGAGCGAGGGAGGGATCGAGAGCTCTAGGGTTTTCTTCTTGCTCCCGTTCTTCTTGCTCTCCCAGGGAGGAGCAATGGATTTGTCCAAGGTCGGCGAAAAAATCTTGAGCTCCGTTAGGTCCGCGAGATCTCTCGGATTGCTCCCTCCCGTTTCTGATCGCCCCGAGGTTCCAGCTCGAGCTGCTGCTGCAGCTGCTGTAGCTCGTGCTCTTGCTGGGTTACCTCCTCATCAGAGATATAGTCTTTCATCAAGTTCAGAAGAACTGAGTTCAATATATGGAAGCAGACCTCAAGGCCAAGTAGTGGAGGAGCTGGAGGATGAATTCTATGAAGAGGACTTTGATCCAATTAGGCATGTTTTAGAGCACGTTCCAGCTGAAGATAATGAGCtaacatattttgaaaaacaGGCTGCCCTGAGATTGGCCCAACTGGATAGAGTAGCTGAGCGATTATCTCGCCATGTTATGGAGCATCATGAAGTAATGGTGAAGGGGATGAATTTGGTCAGAGAATTGGAAAAAGATTTAAGAATTGCAAATGTCATCTGTATGAATGGAAGAAGACACTTGACTTCATCTATGCATGAGGTTTCAAGGGATTTGATTGTGAATTCTTATTCAAAAAAGAAACAGGCTCTTCTGGACATGCTTCCAACCTTGACTGAACTTCGACGTGCTTTGGACATGCAATCAACACTTGAATCCCTTGTAGAGGAAGGGAATTACTGGAAGGCATTTCAAGTCCTATCTGAGTATTTGCAACTCTTAGATAGTTTGTCAGAGCTTTCAGCAATACAAGAGATGAGTCGTGGTGTGGAGGTTTGGCTGGGAAGAACTTTACAGAAGCTGGATGCTCTTTTATTGGGAGTATGTCAAGAATTCAAGGAAGATGGCTATATAACAGTAATTGATGCATATGCATTGATAGGGGATACTGCTGGTCTTGCTGAAAAGATACAGAGTTTCTTCATGCAAGAAGTTATATCAAAAACACACTCTGTATTAAAGGCTATTGTACATGAGGATGAGGAGGGACTTTCGCAAAATAGTAGGCTCACTTACAGTGATCTATGCCTTCAAATACCTGATTCGAAGTTCAGGCAATGCTTATTAAGAACATTGGCTGTTCTATTTGACCTTATGTGTTCATACCATGAAATTATGGATTTCCAGCTAGAAAGAAAGGACTCAGCAGCACAAACTTCAAATAAGTGCAATGAAGAGATTTCCTGTAGTCCAGGTGAGGCTCGGGAAGTTGATTCAGATGTAAGAGCCTGCAACAATTCTATATCCAGTTCCGGAGATATAATACATGGCTCATCTTCTAGGGAGGAATCTGCAACAATGACCTCACTGACTGAAACTAGTGGTTCACCATACAGTGATTCTCATGATCCAATTAAGGAGGCTGGAAAGGAGGACTGTGCAACATCAGGCATTGAATCCCCTTGGTACCATCTTCGTAAAGAAGCCACAACATTTGTTTCACAGACCCTTCAAAGAGGACGCAGGAATCTGTGGCATCTCACTGCAAGTCGTGTGTCAGTATTGCTTTCTTCTGCTGCAGCCTGTTCTGCTAGCATTCatcaattcttgaaaaattatgAAGATCTGTGTGTCTTTATTTTGACCGGGGAAGCCTTTTGTGGAATTGAAGCAGTTGAATTTAGGCAGAAGTTAAAGGTGGTTTGTGAAAACTATTTCATAGCTTTTCATCGACAAAATGTGCATgcaCTAAAAATGGTTCTGGAGAAAGAGACTTGGATAAAATTACCTCCAGATACAGTACAAATTATCAGTTTTGCAGGACTTATTGGTGATGGAGCACCATTGATTTCTTTATCCAGCAGTAAATCAATTAATGTCAGTGCAATCCATTCTAATAAATTGTTGAATATAGTTCACACTGGTGCAAGGAAGAATGGGTTTTCTCACTGGATTAAAAGTGGAAACCCTTTCTCGCAAAAATTACCACCCTCCAACCAAGGTCATGGTTACTCCCAACCTAATGGAACAGTTTATGGTGAATTTGACGGAAGTTCAACCAATAACTTTCATGATGATAAAGTCTCACCTAGAAAGAATGATTCCAATCAAATGAATGGTGCCAATTCTGTTTCAGAAGATGAAAATGAGGATCTTCTTGCTGACTTTATTGATGAAGACAGTCAACTACCAAGTAGAAGTTCTAAACCCCATCATTCAAGAACTCTCTCTTCACATGGTAATGACGAAGAGAATACAACACAAACTGGATCTTCTCTATGTCTTTTAAAGTCTATGGATAAATATGCAAGGCTTATGCAAAAATTGGAAGTGGTAAATGTTGAGTTCTTTAAGGGAATATGCCAattgtttggaatttttttctattttatatatgaaatatttggTCAGCAAAACACTAGCTCAAATGGAAAAAGCTCAactaactctcttaattATCGCTTGAGGGCAGCTTTATCCAGAGTAAACCAAGATTGTGAAGCGTGGATTAAGTCTCAATCGTCTTCACCAACATCTTTGAATTCATCATTTGTACATGCTGAGTTGACACCTACAAATGCTCCCAATACGAATTTTGGTCACTCAGGGACTTCTTTGGGTCTCAAGGAAAGATGTGTGGCTGTTGACACTATATCTCTTGTTGCTCGAATACTGAATAGATCTAAAGCTCATCTCCAATCAATGCTCTTGCAAAGTAATTCAACTGTACTCGAGGATTTCTATGTTCATCTGGTGGATGCTGTACCGGATCTTACAGAACATGTTCATCGCAATACAGTGAGACTACTGTTGCACATTAATGGATATGTTGAACGTGTTGCCAATTGTAAATGGGAATTAAAAGAGCTTGGCATGGAGCATAATGGATATGTTGATTTGTTGCTGGGGGAGTTTAAGCACTATAAAACACGACTTGCTCATGGAGGAATTCGTAAAGAGATGCAAGACCTATTATTGGATTATGGGCTTGAAATTATGGCAGAAACTCTTGTTGAAGGACTTTCACGGGTGAAGAGATGTAGTGATGAAGGACGAGCTCTTATGTCATTAGATCTGCAGGTTTTGATCAATGGGTTACAGCATTTTGTGTCGCTGAATGTGAAGCCCAAGCTACAAATGGTTGAAACTTTCATCAAGGCTTTCTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCAGGAATACAGTAAAAGCCAGATTGTTGGACTGATCAACCTCGTTGCCACTATGAAAGGTTGGAAGAGGAAAACCAGGTTGGATATACTGGAAAAGATTGAATGA 3363 0.402 MQPNLFPFGSVLGNPFIFNGDLSEGGIESSRVFFLLPFFLLSQGGAMDLSKVGEKILSSVRSARSLGLLPPVSDRPEVPARAAAAAAVARALAGLPPHQRYSLSSSSEELSSIYGSRPQGQVVEELEDEFYEEDFDPIRHVLEHVPAEDNELTYFEKQAALRLAQLDRVAERLSRHVMEHHEVMVKGMNLVRELEKDLRIANVICMNGRRHLTSSMHEVSRDLIVNSYSKKKQALLDMLPTLTELRRALDMQSTLESLVEEGNYWKAFQVLSEYLQLLDSLSELSAIQEMSRGVEVWLGRTLQKLDALLLGVCQEFKEDGYITVIDAYALIGDTAGLAEKIQSFFMQEVISKTHSVLKAIVHEDEEGLSQNSRLTYSDLCLQIPDSKFRQCLLRTLAVLFDLMCSYHEIMDFQLERKDSAAQTSNKCNEEISCSPGEAREVDSDVRACNNSISSSGDIIHGSSSREESATMTSLTETSGSPYSDSHDPIKEAGKEDCATSGIESPWYHLRKEATTFVSQTLQRGRRNLWHLTASRVSVLLSSAAACSASIHQFLKNYEDLCVFILTGEAFCGIEAVEFRQKLKVVCENYFIAFHRQNVHALKMVLEKETWIKLPPDTVQIISFAGLIGDGAPLISLSSSKSINVSAIHSNKLLNIVHTGARKNGFSHWIKSGNPFSQKLPPSNQGHGYSQPNGTVYGEFDGSSTNNFHDDKVSPRKNDSNQMNGANSVSEDENEDLLADFIDEDSQLPSRSSKPHHSRTLSSHGNDEENTTQTGSSLCLLKSMDKYARLMQKLEVVNVEFFKGICQLFGIFFYFIYEIFGQQNTSSNGKSSTNSLNYRLRAALSRVNQDCEAWIKSQSSSPTSLNSSFVHAELTPTNAPNTNFGHSGTSLGLKERCVAVDTISLVARILNRSKAHLQSMLLQSNSTVLEDFYVHLVDAVPDLTEHVHRNTVRLLLHINGYVERVANCKWELKELGMEHNGYVDLLLGEFKHYKTRLAHGGIRKEMQDLLLDYGLEIMAETLVEGLSRVKRCSDEGRALMSLDLQVLINGLQHFVSLNVKPKLQMVETFIKAFYLPETEYVHWARAHQEYSKSQIVGLINLVATMKGWKRKTRLDILEKIE 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2416 1120 PANTHER UNCHARACTERIZED 3 1120 IPR040047 GO:0032456|GO:0042147|GO:1990745
Ssu3g2416 1120 MobiDBLite consensus disorder prediction 671 730 - -
Ssu3g2416 1120 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATED 3 1120 - -
Ssu3g2416 1120 Pfam Vacuolar-sorting protein 54, of GARP complex 123 412 IPR019515 -
Ssu3g2416 1120 MobiDBLite consensus disorder prediction 671 708 - -
Ssu3g2416 1120 MobiDBLite consensus disorder prediction 457 484 - -
Ssu3g2416 1120 Pfam Protein of unknown function C-terminus (DUF2451) 890 1120 IPR019514 -
Ssu3g2416 1120 MobiDBLite consensus disorder prediction 744 773 - -
Ssu3g2416 1120 MobiDBLite consensus disorder prediction 457 488 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2416 K23288 - gmx:100788476 1993.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2416 3 75626760 75650006 Ssu3g2416 3 75626760 75650006 ECH