Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2415 ATGGCTCCATTTCCGTTGGAGAACGGCGTCGAAGGAGACGACGAGAGAGAAGAGGAAGacgaagaggaagaagaagaagacgaaGAAGTGGAAGATGAAGTAGACGAAGAGGAACCGAGGCTTAAGTACCAGAGAATGGGAGGTAGCATACCTTCGCTGCTAGCGAGTGATGCGGCGTCATGTATCGCGGTCGCGGAGCGAATGATAGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGGTTAAGGAATTTTCCGTACATGCTTCTGTTGTCAACGACCTAAGCTTTGATGTAGAAGGTGAATATATTGGAAGCTGTTCTGGTGATGGATCGGTTGTTATAAACAGCCTTTTCACTGATGAGAGAATGAAATTTGAGTACCATCAGCCGATGAAGGCAGTCGCGTTGGATCCGGATTATGCAAGGAGAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCtggtcatttatatttaaattcaaagaaaTGGTTGGGCTACCGTGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTATAACATTTATTGAAAAACCACGAGGGAGTCCACGTCCTGAGCTTTTGCTTCCTCACCTGGTTTGGCAGGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTGTCAAAATTGCTTCAATTAGGACAAATCACCATAAAGCTACCAATGGGTCATACAGGCAAGTTCCTTTGTCTGGTATGACCCAGGTGGATATTGTGGCATCTTTCCAAACCAGCTATTTAATCTCAGGACTTGCCCCTTTTGGTGATGCTTTGGTTGCCCTAGCATATATTCCTGGAGACGAAGATGGAGATAAGGATTTTAGTAGCACTGCTCCTTCACGGCGGGGCAATGCACAACGACCAGAAGTAAGAATAGTAACATGGAATAATGATGAGCTTTCTACAGATGCTCTACCGGTACATGGGTTTGAGCATTACAGGGCAAACGACTATTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCAGGTGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCCAAAGGATGTAGTTATTGCAAAGCCAAGGGATACTGAAGATCATATTGCTTGGCTTCTTCAGCATGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGTCAAGGACGGAGTGAACTACTTGATGAGGTGGGATCCAGGTACCTTGATCATCTGATTGTGGAAAGAAAATATGGTGAAGCAGCATCTTTGTGTCCCAAGTTGCTTCGAGGATCAGCTTCCGCATGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAACTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATCCATCTTTTCATAAGGATCTCTTGTCTACCGTAAAATCCTGGCCATCTGTAATTTATTCTGCATTACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCTTCCATGACCGATTCGCTTAAGGAGGCATTAGCAGAGTTGTATGTAATCAATGGCCAATATGAGAAAGTCTTCTCATTGTATGCTGATCTTATGAAGCCAGAAGTGTTTGATTTCATTGATAAATATAACCTACATGATGCAATTCGTGGAAAGGTTGTCCAACTAATGATGCTAGATTGCAAGCGTGCAGTTCCTCTGTTAATCCAGAACAGGGACTTAATAAGTCCGCTTGAAGTTGTGAAGCAACTTCTAAATGCTGTTGATAAGAGTGCTTGtagatattttttacatttatatctCCATTCATTATTTGAAGTAAATCCTCATGCTGGGAAAGACTTCCATGACATGCAgGTAGAACTCTATGCGGACTATGATCCAAAGATGCTGCTACCTTTTCTTCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTATGAAATTTGCATTAAAAGAGACCTAATGAGGGAGCAAGTCTTCATCTTAGGAAGGATGGGAAACTCAAAACAAGCCCTAGctgttattataaataagttggGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCACTCTACATTGTAAATAAGGTTCCTAACGGGTTGGAAATACCTCGGCTCCGTGATCGGCTGGTTAAAATTATCACTGATTACAGGACTGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCaatcttttaattaagtattacaAAGAGGCAAGGCATGGAATTTCTTTAGGTAACGAAGAAGATGAGCCACGGGTTAAAATGAGTGATACTCATGCTTCTCAGAATGTATCGGtcattgttttcttttgctGTCATGGTTATCACACAACTTGTCTCATGGATTCGTCTTACACTATTAGTAACAAGAAAGAGATCGAAGCCACGTCCCTAGAGGCGGAAACGTATGATGATTACAATGGTTATGTGGACGATGAAGATGAAGAAACCAAGTTGGACGGTCCTCGTATGCGTTGTATATTGTGTACTACTGCTGCTAGTTGA 2763 0.4195 MAPFPLENGVEGDDEREEEDEEEEEEDEEVEDEVDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSVHASVVNDLSFDVEGEYIGSCSGDGSVVINSLFTDERMKFEYHQPMKAVALDPDYARRMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRITFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGTSVKIASIRTNHHKATNGSYRQVPLSGMTQVDIVASFQTSYLISGLAPFGDALVALAYIPGDEDGDKDFSSTAPSRRGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRANDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVINGQYEKVFSLYADLMKPEVFDFIDKYNLHDAIRGKVVQLMMLDCKRAVPLLIQNRDLISPLEVVKQLLNAVDKSACRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLMREQVFILGRMGNSKQALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGISLGNEEDEPRVKMSDTHASQNVSVIVFFCCHGYHTTCLMDSSYTISNKKEIEATSLEAETYDDYNGYVDDEDEETKLDGPRMRCILCTTAAS 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2415 920 MobiDBLite consensus disorder prediction 11 36 - -
Ssu3g2415 920 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 610 757 IPR000547 GO:0006886|GO:0016192
Ssu3g2415 920 Gene3D - 9 284 IPR015943 GO:0005515
Ssu3g2415 920 Coils Coil 16 36 - -
Ssu3g2415 920 PIRSF Vps41 3 879 IPR016902 GO:0034058|GO:0046907
Ssu3g2415 920 Pfam Region in Clathrin and VPS 623 753 IPR000547 GO:0006886|GO:0016192
Ssu3g2415 920 PANTHER VACUOLAR PROTEIN SORTING VPS41 843 919 IPR045111 GO:0006623
Ssu3g2415 920 PANTHER VACUOLAR PROTEIN SORTING VPS41 4 842 IPR045111 GO:0006623
Ssu3g2415 920 SUPERFAMILY WD40 repeat-like 56 249 IPR036322 GO:0005515
Ssu3g2415 920 MobiDBLite consensus disorder prediction 1 41 - -
Ssu3g2415 920 SMART WD40_4 84 123 IPR001680 GO:0005515
Ssu3g2415 920 SMART WD40_4 172 208 IPR001680 GO:0005515
Ssu3g2415 920 Gene3D Tetratricopeptide repeat domain 609 821 IPR011990 GO:0005515
Ssu3g2415 920 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 843 919 - -
Ssu3g2415 920 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 4 842 - -
Ssu3g2415 920 SMART CLH_2 610 757 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2415 Ssu-Chr3 75596786 75618965 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2415 K20184 - gmx:100804340 1693.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2415 3 75596786 75618965 Ssu3g2415 3 75596786 75618965 ECH