Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2408 ATGATGAAGCGTGGTGAGGCTCACTTCTCTCACGGGATAGCAGAGAACTTAGATGATCCTAAATATGCTCATTATAAATACTGGTCTAATCCACTTGAGACCAAACTACCTGATGCTCCGGACATGGAAATATACTGTCTATATGGTGTTGGAATTTCTACCGAAAGATCACATGTACACAAGTTGTCCCCTTCTGACAAGTACAAGAGTATTCCTTTCCAAAGTGATAGTTCAGCAGATGGAGAAGAGGGAAGTTGGTTACAAAATGGTGTTTATTTTGTGGATGGTGATGAGAGTGTGCCTATTGTAAGCTCAGGGTTCATGTGTGCCAAAGGATGGCATGGAAGAACACGGTTCAATCCATCTGGCATGGCTACATATACAAGAGAGTATCAGCTCAAACAACCAGGTAGTCTTATTGATAGGAGAGGTCTAGAGAGAGGACCAAGTTCCAACATTATGGGAAATGCTGCCTTCATTGAAGATGTTTTACGAGTTGCTGCTGGAGCCACGGGTGTATATATTGGAGGTGATACAATATTTTCAGATATAATGAGGATGTCTGAGAGGATAAATCTCAGACTATGA 588 0.4167 MMKRGEAHFSHGIAENLDDPKYAHYKYWSNPLETKLPDAPDMEIYCLYGVGISTERSHVHKLSPSDKYKSIPFQSDSSADGEEGSWLQNGVYFVDGDESVPIVSSGFMCAKGWHGRTRFNPSGMATYTREYQLKQPGSLIDRRGLERGPSSNIMGNAAFIEDVLRVAAGATGVYIGGDTIFSDIMRMSERINLRL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2408 195 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED 1 195 - -
Ssu3g2408 195 PANTHER PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 2-RELATED 1 195 - -
Ssu3g2408 195 Pfam Lecithin:cholesterol acyltransferase 6 121 IPR003386 GO:0006629|GO:0008374
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2408 Ssu-Chr3 75433655 75434583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2408 1 195 Acyl Lipid Metabolism Gene Families AT3G44830 67.005 9.73e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2408 K00679 - gmx:100806313 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2408 3 75433655 75434583 Ssu3g2408 3 75433655 75434583 ECH