Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2401 ATGGGTACCCTACTTCCAGATGAAAAATCAGAGAATCCAAATGGTTTGGAACACCACCACCAAAAAGATATTGATGCAGGCGCTCTCTTTGTCCTCAAATCCAAAGGTTCTTGGATGCACTGTGGGTACCACTTGACAACATCGATTGTGGCACCAGCTCTTCTAAGTCTTCCTTATGCTTTGACCTTTCTTGGATGGACGGCTGGGATCTTATGCCTAGTGATTGGAGCTTTGGTCACTTTCTATTCCTACAATTTAATATCCCGGGTCCTAGAACACCACGCTCAGATGGGTAAGCGTCAGCTACGATTTAGAGACATGGCTCGCGACATTTTAGGTCCACGATGGGGTCGTTATTTTGTTGGCCCAATTCAGTTCGCAGTCTGTTATGGTGCTGTAGTAGCTTGTACTCTCTTGGGAGGACAATGCATGAAGGCAATTTACCTACTATCAAATCCAAACGGGGCCATGAAGCTTTATGAGTTTGTCATCATATTTGGATGCCTCATGTTGATTTTGGCTCAAATCCCATCTTTCCACTCATTGAGGCACATTAATCTGGTGTCCTTGGTTTTGTGCTTAGCCTATAGTGTTGGTGCTACTGCTGGTTCCATATACATTGGAAACTCGTCAAAAGGACCAGAGAAGGATTATTCTTTGAAAGGTGATACAGTGAATCGCTTATTTGGAATCTTCAATGCAATTGCTATCATTGCCACGACTTATGGAAATGGAATCATTCCAGAAATTCAGGCAACATTAGCACCACCTGTAAAAGGGAAGATGTTCAAGGGACTATGCATTTGTTATGTTGTAGTTATAGTCACTTTCTTTAGTGTATCTATATCTGGTTATTGGGCATTTGGCAACGAATCTGAAGGCCTCATCTTAAGCAACTTCGTGGACAATGGGAACCCTCTGGTGCCCAAGTGGTTTATTTACATGACTAACATTTTCACTGTAGCACAATTATCTGCAGTTGGTGTGGTTTATTTGCAACCAACAAATGAAGTGTTGGAGCAAACATTTGGAGACCCAAAAAGCCCTGAATTCTCCAAACGCAATGTAATCCCCAGAGTGATTTCTCGGTCATTAGCTATTACTATTTCAACCACTATAGCAGCCATGCTTCCATTTTTTGGAGACATAAACTCTCTTATAGGAGCTTTTGGTTTTATCCCACTTGACTTCATCTTGCCAATGGTTTTCTACAATTTGACATTTAAGCCATCTAAGCGAAGTCCTATTTTTTGGTTGAATGTGACTATTGCTATGACTTTTTCCGCATTGGGAGCTATAGCAGCAGTTGCAGCAGTTAGACAAATAGTTCTTGAtgcaaaaaattatcaattatttgctaatgtatgA 1368 0.4057 MGTLLPDEKSENPNGLEHHHQKDIDAGALFVLKSKGSWMHCGYHLTTSIVAPALLSLPYALTFLGWTAGILCLVIGALVTFYSYNLISRVLEHHAQMGKRQLRFRDMARDILGPRWGRYFVGPIQFAVCYGAVVACTLLGGQCMKAIYLLSNPNGAMKLYEFVIIFGCLMLILAQIPSFHSLRHINLVSLVLCLAYSVGATAGSIYIGNSSKGPEKDYSLKGDTVNRLFGIFNAIAIIATTYGNGIIPEIQATLAPPVKGKMFKGLCICYVVVIVTFFSVSISGYWAFGNESEGLILSNFVDNGNPLVPKWFIYMTNIFTVAQLSAVGVVYLQPTNEVLEQTFGDPKSPEFSKRNVIPRVISRSLAITISTTIAAMLPFFGDINSLIGAFGFIPLDFILPMVFYNLTFKPSKRSPIFWLNVTIAMTFSALGAIAAVAAVRQIVLDAKNYQLFANV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2401 455 Pfam Transmembrane amino acid transporter protein 35 441 IPR013057 -
Ssu3g2401 455 PANTHER GABA TRANSPORTER 1 23 451 - -
Ssu3g2401 455 PANTHER OS05G0424000 PROTEIN-RELATED 23 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2401 Ssu-Chr3 75309870 75314200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2401 127 455 Organic Solute Cotransporters AT1G08230 66.465 5.37e-157 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2401 - - gmx:100791114 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2401 3 75309870 75314200 Ssu3g2401 3 75309870 75314200 ECH