Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu3g2391 | ATGTTCCGGAAGGGTTCTCATCTCCGCCTTCTCCCTATACCAAAGAAGTACCAGTTTTGGCTTCCACGTAACGCGGTTGCCAATGCCATCGCCGACGGAGTCCAACAGCCCTCGGAGGCCACCATAGCCAGACTGGTCCTCGAATCAGACCCACTGACCCTCCCCGAAGCCCTATCCAGGCCCAGCATCCACTGGACCCCGGACCTCGTCGACAAGGTCCTGAAGCGCCTCTGGAACCACGGGCCCAAGGCCCTCCAGTTCTTCAAACTCCTGGACCGCCGCCACCCGACCTACGTCCACGCCTCGTCGGGCTTCGACCACGCCATCGACATCGCGGCCCGCATGCGCGACTACCCCTCCGCATGGGCCCTCGTGGCCCGCATGCGCTCCCTCCGCCGCGGCCCGACCCCCCGGACCTTCGCCATCATCGCCGAGCGCTACGCCTCCGGCGGAAAGCCCCACCGCGCGGTGAGGGCCTTCCTCACGATGCGCGAGCACGGCTGCCGGCAGGACCTGAGCTCCTTCAACACGGTCCTCGACGTCCTCTGCAAGTCGAAGCGCGTGGAGATGGCGCACAGCTTGTTCAGATCGTTCAAATCGAGGTTCAGAGCCGACGCCGTCAGCTACAACATAATCGCGAACGGCTATTGCCACCTCAGGCGCACGCCGATGGCGCTGCGGGTTTTGAAGGAGATGGTGGAGCGAGGGATCAGCCCTACGACGGTCACGTACAACACGCTGCTGAAAGGGTATTTTCGGAGCAATCAGATCAGGGAGGCCTGGGAGTTTTACCTGGAGATGAAGAAGAGGAAGTGCGGGATTGATGTGGTGACTTACACGACTGTGATCCACGGGTTTGGCGTCGCGGGTGAGGTTAGGAAATCCCGGAGGGTTTTTAGTGAGATGGTGAAGGAGGGCGTGGTTCCTTCGGTTGCCACGTACAATGCTTTGATTCAGGTTTTGTGTAAGAAGGAAAGCGTGGAGAGCGCGGTGGCGGTTTTTGAGGAGATGTTGAGGGAGGGGTTGTGTGCGCCGAATTTGGTTACTTACAACGTTGTTATCCGAGGTTTGTGTCACGCTGGGGACATGGAGAGGGCGTTGGGGTTTATGGGGAGAATGGGGGAACATGGTTTGAGGGCTAGTGTTCAGACTTATAATGTTGTGATAAGGTATTTTTGTGATGCTGGGGAGATTGAGAAGGGGTTGGAGATGTTTGGGGAGATGGGGAATGGGGCGTGTTTGCCTAATCTGGACACTTATAATGTTCTGATCAGTGCGATGTTTGGGAGGAAGAAAGGGGAGGATTTGGTCGTGGCTGGCAAGTTGTTGATGGAGATGGTTGATAGAGGGTTCTTGCCGAGGAAGTTTACTTTTAATAGGGTTTTGAATGGACTTGTTCTTACAGGGAATCAGGAATTTGCAAAGGAGATACTGAGAATGCAGAGCAAGTGCGGCCGTGTTGTTCGCCGTTTGAAATTGTGA | 1482 | 0.5655 | MFRKGSHLRLLPIPKKYQFWLPRNAVANAIADGVQQPSEATIARLVLESDPLTLPEALSRPSIHWTPDLVDKVLKRLWNHGPKALQFFKLLDRRHPTYVHASSGFDHAIDIAARMRDYPSAWALVARMRSLRRGPTPRTFAIIAERYASGGKPHRAVRAFLTMREHGCRQDLSSFNTVLDVLCKSKRVEMAHSLFRSFKSRFRADAVSYNIIANGYCHLRRTPMALRVLKEMVERGISPTTVTYNTLLKGYFRSNQIREAWEFYLEMKKRKCGIDVVTYTTVIHGFGVAGEVRKSRRVFSEMVKEGVVPSVATYNALIQVLCKKESVESAVAVFEEMLREGLCAPNLVTYNVVIRGLCHAGDMERALGFMGRMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEMFGEMGNGACLPNLDTYNVLISAMFGRKKGEDLVVAGKLLMEMVDRGFLPRKFTFNRVLNGLVLTGNQEFAKEILRMQSKCGRVVRRLKL | 493 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu3g2391 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 346 | 380 | IPR002885 | - | |
| Ssu3g2391 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 240 | 274 | IPR002885 | - | |
| Ssu3g2391 | 493 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 27 | 493 | - | - | |
| Ssu3g2391 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 275 | 309 | IPR002885 | - | |
| Ssu3g2391 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 381 | 415 | IPR002885 | - | |
| Ssu3g2391 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 171 | 201 | IPR002885 | - | |
| Ssu3g2391 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 416 | 453 | IPR002885 | - | |
| Ssu3g2391 | 493 | PANTHER | OS02G0679200 PROTEIN | 27 | 493 | - | - | |
| Ssu3g2391 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 205 | 239 | IPR002885 | - | |
| Ssu3g2391 | 493 | Gene3D | Tetratricopeptide repeat domain | 415 | 489 | IPR011990 | GO:0005515 | |
| Ssu3g2391 | 493 | Gene3D | Tetratricopeptide repeat domain | 145 | 253 | IPR011990 | GO:0005515 | |
| Ssu3g2391 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 277 | 311 | IPR002885 | - | |
| Ssu3g2391 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 242 | 275 | IPR002885 | - | |
| Ssu3g2391 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 174 | 201 | IPR002885 | - | |
| Ssu3g2391 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 207 | 240 | IPR002885 | - | |
| Ssu3g2391 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 384 | 416 | IPR002885 | - | |
| Ssu3g2391 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 313 | 346 | IPR002885 | - | |
| Ssu3g2391 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 348 | 380 | IPR002885 | - | |
| Ssu3g2391 | 493 | Pfam | PPR repeat | 174 | 200 | IPR002885 | - | |
| Ssu3g2391 | 493 | Pfam | PPR repeat | 207 | 237 | IPR002885 | - | |
| Ssu3g2391 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 310 | 344 | IPR002885 | - | |
| Ssu3g2391 | 493 | Pfam | PPR repeat family | 239 | 286 | IPR002885 | - | |
| Ssu3g2391 | 493 | Pfam | PPR repeat family | 381 | 427 | IPR002885 | - | |
| Ssu3g2391 | 493 | Pfam | PPR repeat family | 309 | 359 | IPR002885 | - | |
| Ssu3g2391 | 493 | Gene3D | Tetratricopeptide repeat domain | 254 | 410 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu3g2391 | 133 | 488 | Glycosyltransferase | AT1G05670 | 28.412 | 3.20e-46 | 169 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu3g2391 | - | - | gmx:100808784 | 803.897 |