Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2369 ATGGCAATTGATAAAATTCTTAAAGATGAAGCCagtgaagaaaaaggagagcGGGCTAGAATGGCTTCTTTTGTTGGAGCCATGGCTATTGCTGACTTGGTGAAGACAACCTTAGGGCCAAAGGGAATGGATAAAATTTTGCAGTCAACTGGTAGAGGACGTGAAGTTACTGTCACTAATGATGGTGCTACAATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTGGAAATATCAAAAGTTCAAGATGATGAAGTTGGGGATGGAACTACCTCGGTTGTTGTATTGGCTGGTGAACTTTTAAGGGAGGCAGAAAAGCTGGTTGCAACCAAGATTCATCCAATGACAATAATATCAGGTTTCCGAATGGCAGCAGAGTGTGCTCGTAATGCTTTGTTACAGAAGGTTGTGGACAACAAAGCGGATGCTGAGAAATTCAGGTCAGACTTATTGAACATTGCAATGACTACTTTGAGCTCCAAGATTCTCTCACAGGACAAGGTGCATTTTGCAAAATTAACTGTGGATGCTGTAATGAGGCTAAAGGGAAGCACTAATTTAGAAGCTATCCAGATTATAAAGAAACCTGGAGGATCTTTGAAGGATTCATTCTTAGATGAAGGATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAATGCAAAGATACTGGTTGCAAACACTGCCATGGACACCGACAAGGTGAAGATATATGGTGCACGTGTTCGTGTTGATTCTATGGCTAGAGTTGCTCAGATTGAAGCAGctgagaaagagaaaatgagagaaaaggtgCAGAAGATAATAGGTCATGGTATCAACTGTTTTGTTAACAGACAGTTGATTTACAATTTTCCAGAGGAGCTCTTTGCTGATGCGGGAATATTGGCTATTGAGCATGCTGATTTTGATGGTATTGAGCGTCTGGCTTTGGTAACTGGTGGTGAAATTGCGTCAACCTTTGACAATCCTGAGTCTGTTAAGCTTGGGCATTGTGATCTTATTGAGGAGATTATGATTGGCGAGGATAAACTTATTCATTTTTCTGGTGTTGCTATGGGACAGGCATGTACAATAGTTCTGAGAGGTGCTAGCCACCATGTTCTTGATGAGGCTGAGAGGTCATTGCATGATGCATTGTGTGTGCTATCTCAGACTGTCAATGACAGCAGAGTGGTGCTTGGAGGTGGGTGGCCTGAGATGGTGATGGCAAAGGAAGTGGATGAGTTGGCTAAGAGAACTCCTGGAAAGAAGTCTCTTGCTATTGAGGCATTCTCCCGTGCACTCTTGGCTATCCCAACAATCATTGCTGATAATGCTGGTTTGGACAGTGCTGAGTTGATTTCTCAGCTCCGTGCAGAGCATCAGAAGGAGGGCTGTACTGCAGGAATTGATGTTATTTCTGGTTCTGTTGGAGACATGGCTGAACGGGGGATATCAGAAGCATTCAAAGTCAAGCAAGCTGTAGTGCTATCTTCAACTGAGGCAGCTGAGATGATCCTTAGAGTTGACGAAATCATCACTTGTGCTCCAAGGAGGAGAGAAGACAGAATGTAA 1584 0.4179 MAIDKILKDEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVEISKVQDDEVGDGTTSVVVLAGELLREAEKLVATKIHPMTIISGFRMAAECARNALLQKVVDNKADAEKFRSDLLNIAMTTLSSKILSQDKVHFAKLTVDAVMRLKGSTNLEAIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMARVAQIEAAEKEKMREKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCDLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVVLGGGWPEMVMAKEVDELAKRTPGKKSLAIEAFSRALLAIPTIIADNAGLDSAELISQLRAEHQKEGCTAGIDVISGSVGDMAERGISEAFKVKQAVVLSSTEAAEMILRVDEIITCAPRRREDRM 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2369 527 CDD TCP1_beta 6 522 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Ssu3g2369 527 PANTHER BNAA02G05110D PROTEIN 5 525 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Ssu3g2369 527 ProSitePatterns Chaperonins TCP-1 signature 1. 35 47 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Ssu3g2369 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 56 74 IPR017998 GO:0140662
Ssu3g2369 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 32 48 IPR017998 GO:0140662
Ssu3g2369 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 86 105 IPR017998 GO:0140662
Ssu3g2369 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 367 389 IPR017998 GO:0140662
Ssu3g2369 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 401 413 IPR017998 GO:0140662
Ssu3g2369 527 SUPERFAMILY GroEL apical domain-like 206 372 IPR027409 -
Ssu3g2369 527 PANTHER CHAPERONIN 5 525 IPR017998 GO:0140662
Ssu3g2369 527 ProSitePatterns Chaperonins TCP-1 signature 3. 86 94 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Ssu3g2369 527 TIGRFAM chap_CCT_beta: T-complex protein 1, beta subunit 5 523 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Ssu3g2369 527 Gene3D - 27 516 IPR027413 -
Ssu3g2369 527 Pfam TCP-1/cpn60 chaperonin family 30 517 IPR002423 GO:0005524
Ssu3g2369 527 SUPERFAMILY GroEL-intermediate domain like 152 399 IPR027410 -
Ssu3g2369 527 Gene3D GroEL 211 363 IPR027409 -
Ssu3g2369 527 SUPERFAMILY GroEL equatorial domain-like 13 519 IPR027413 -
Ssu3g2369 527 ProSitePatterns Chaperonins TCP-1 signature 2. 58 74 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Ssu3g2369 527 Gene3D - 142 399 IPR027410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2369 Ssu-Chr3 74722002 74727882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2369 200 386 Acyl Lipid Metabolism Gene Families AT4G33240 21.393 2.50e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2369 K09494 - gmx:100797805 983.015