Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2368 ATGTTAGCGTATGTGTGTGGAGAGGTTAAGGATGGAAAAGCAATTCTACAAGAGAAACCATTTGAGATGGGTCAAACCCTCAACGGAACCTCAAAATTAGACATATATGGAGAAATgaatttgttgaagaagaaaatagatgaACTCCGATCAAAAGATGCTACTGAGAACAcaatcaaatatacaatgaaagaGTACGGAATTGAAAGAGCAAATTTTTATGGCTGGCCAAACACATATGCATTCACGAAAGCAATGGGAGAGATGCATGTCTTGCATCATAAAGATAATGTGCCACTAATCATTATACGCCCCACCATGGTAACCAGTACGTATAAGGACCCATTTTCTGGTTGGATTGAAGGTTTAagAACTCTTGACAGTATAATATATGGCTATGGCCAAGGGGAAATAACAAGCTTTCTTGGTCATCCCAAGACAATTTTGGATACAATACCTGCAGACTTGGTTATCAATTGTGTGATAACAGCAATTGTTGCTTGTTCAAATCAAGCTCCAAAGAATTTCATCTACCACGTTTCTTCTTCGTTAAGAAATCCTCTCAAAATTTCTGATGTTCGTAATAGCTGCTATCATTACTTCACTAAAGTCccgtacaaaaataaaaatggaaaaccaATTATCGTCTCCAAGGCAACTTTGTTGTCAAGTATGTGTGCTTTCGACATTTATATGACTGCCGATACGTTTTGCCGCTAA 720 0.3444 MLAYVCGEVKDGKAILQEKPFEMGQTLNGTSKLDIYGEMNLLKKKIDELRSKDATENTIKYTMKEYGIERANFYGWPNTYAFTKAMGEMHVLHHKDNVPLIIIRPTMVTSTYKDPFSGWIEGLRTLDSIIYGYGQGEITSFLGHPKTILDTIPADLVINCVITAIVACSNQAPKNFIYHVSSSLRNPLKISDVRNSCYHYFTKVPYKNKNGKPIIVSKATLLSSMCAFDIYMTADTFCR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2368 239 PANTHER FATTY ACYL-COA REDUCTASE 3 233 - -
Ssu3g2368 239 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 184 IPR036291 -
Ssu3g2368 239 PANTHER MALE STERILITY PROTEIN 2-RELATED 3 233 IPR026055 GO:0080019
Ssu3g2368 239 Pfam Male sterility protein 17 160 IPR013120 -
Ssu3g2368 239 Gene3D - 3 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2368 Ssu-Chr3 74711540 74713132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2368 3 233 Acyl Lipid Metabolism Gene Families AT5G22500 48.485 2.94e-77 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2368 K13356 - sind:105170000 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2368 3 74711540 74713132 Ssu3g2368 3 74711540 74713132 ECH