Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2353 ATGCACGAATGCTACCCAATATCTGTAAGTCAAAAGCAGAGGAAAACCAACACAAACATCAATAAACCATTGATTGAAATTGAAACCCCTCAACTTCTTACAGAGAACATCTGCATATTATTAAGTTTGGTGACAGATCTACCCTCTATTCCTTCAGGGATGGTTTCAATAGCAGCTAAAGTGTTACTCATAGGTCTTCTGGGAATGTTTTACCAGGCCACTCAACTCCCCCCTCCAAACCGCGATGATTCACCGGATGATGTTCCAGTTTCACCAAGAGTCAGACTCAGTGATGGAAGGTACCTGGCTTATAGAGAAAAGGGTGTCCCCAAGGACAAAGCAAAGCACAGCATCATCATTGTTCACGGCTTTGGAAGCTCAAAAGACATGAATTTTCTGGCACCccaaGAGCTAATAGATGAACTGGGGATATATATTCTGCAATATGACCGGGCTGGGTATGGTGAAAGTGATCCAAACCCCAAACGCTCATTGAAAAGTGAAGCACTTGACATTGAAGAGCTTGCTGATCAGTTACAGATAGGgtcaaaattttatgtgattggtGTCTCAATGGGATCATATGCTACCTGGAGTTGTTTGAACTATATTCCCAACAGGCTAGCAGGTGTAGCTATGATAGCCCCAGTGATAAATTATCAATGGGCATCGTTTCCTGAGAGTTTGATAAAAGGGGACTATAGGAGGAAACTTATCAAGTGGGCCATGTGGCTTGCAAAATTTTCTCCTACACTGTTGCACTGGTGGGTGACTCAAAAGTGGCTCCCTTCAAATTCTGTCATAGAAAAAAACCCAGCATTCTTCAACAAAAGGGATATCGATATTTTAGAGACAATTCCCGGGTTCCCAATGCTTACCAAGGACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGATGACTGGATGGTGGCCTTTGGCAACTGGGAATTTGACCCAATGAAACTAAGCAATCCATTCCCTCAAAATAGAAGTTCAGCTCATATTTGGCAGGGCTATGAAGATAAGGTAGTGCCCTCTCAAATCCAAAGGTTTGTTAAAGAGAAGCTGCCTTGGATACAGTATCATGAAGTTCCAGATGGTGGCCATTTGATTGTGCACTATAGTGGCGTATGTGAGGCCATTCTGAAGGCACTTTTACTTGGAGAAGAAAATCTTTCATACAGACCTAGACCAGAAGTCTTTGTAGCTTGA 1218 0.4171 MHECYPISVSQKQRKTNTNINKPLIEIETPQLLTENICILLSLVTDLPSIPSGMVSIAAKVLLIGLLGMFYQATQLPPPNRDDSPDDVPVSPRVRLSDGRYLAYREKGVPKDKAKHSIIIVHGFGSSKDMNFLAPQELIDELGIYILQYDRAGYGESDPNPKRSLKSEALDIEELADQLQIGSKFYVIGVSMGSYATWSCLNYIPNRLAGVAMIAPVINYQWASFPESLIKGDYRRKLIKWAMWLAKFSPTLLHWWVTQKWLPSNSVIEKNPAFFNKRDIDILETIPGFPMLTKDKLREQVVFDTLRDDWMVAFGNWEFDPMKLSNPFPQNRSSAHIWQGYEDKVVPSQIQRFVKEKLPWIQYHEVPDGGHLIVHYSGVCEAILKALLLGEENLSYRPRPEVFVA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2353 405 Gene3D alpha/beta hydrolase 90 388 IPR029058 -
Ssu3g2353 405 Pfam Alpha/beta hydrolase family 118 374 IPR000073 -
Ssu3g2353 405 SUPERFAMILY alpha/beta-Hydrolases 91 374 IPR029058 -
Ssu3g2353 405 PANTHER HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED-RELATED 56 398 - -
Ssu3g2353 405 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 56 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2353 Ssu-Chr3 74437638 74440700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2353 112 374 Acyl Lipid Metabolism Gene Families AT1G64670 22.581 2.60e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2353 - - gmx:100803294 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2353 3 74437638 74440700 Ssu3g2353 3 74437638 74440700 ECH
Ssu8g0683 8 11273257 11275470 Ssu3g2353 3 74437638 74440700 PCT