Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2350 ATGGACCAGCTTCCTGTTGAAGTGATTGGGAACATTCTGTCACACTTGAGGGCTGCACGAGATGTGGTGATAGCCTCTGCAACATGCAGGAAATGGCGACAAGCGTGCTGCAAGCACCTTCATACACTCTCCTTCAGCTCCAAAGATTGGCCTATCTACCGAGATTTGACGACTACCCGCCTTGAGATTTTGATCACACAAACCATTTTTCAGACCTCAGGCTTGCAGGCCCTCTCCATTTTGATGGAAGATGTGGATGAGTTCTCGGCTTCCACCGTTACCGCTTGGCTCCTGTACACCAGGGAAACTCTGAGGCAATTGCATTATAATGTCAAGACTATGCCTAATGTTAACATTCTTGAAATATGTGGCAGGCACAAGCTGGAAACACTAGATCTGGCTCATAATTCCATTGCTGGTGTTGAGCCTAATTATCAGAGGTTCCCTTGTTTGAAATCACTTTCCTTGAGTTATGTCAGTATATCTGCATTGGATCTGAATCTTTTGGTATCTGCGTGTCCGAAGATTGAAGCTTTGGAACTTGTCAATCCTGAGATTGCAATGTCTGATGCACAGGTGACCATTGAATTGAGTAGTTCAACGCTGAAGAGTGTGTATGTAGAAGCAATCAGTTTGGACAAGTTTATGTTGGAGGCTGATGGGCTTGAGTCCTTGCACTTGAAAGATTGTGCACTCGAGTTTTTTGAACTCATTGGCAAGGGGATCTTGAAGCATTTTAAGATTGATGATGTTAGTGTTATACATCTTGATATTGGTGAGACAGTTGAGAATCTTGAGACTGTGGATATCAGCAACTTCACAATTATATGGCCAAAGTTTTACCAGATGATTTCAAGATCTTTGAATTTAAAGAGGCTTCGGCTTTGGGATGTGATGTTTGACGATGAGGATGAGGTTGTGGATTTGGAAACAATTGCGACTTGCTTTCCCCACCTGAGCCATTTATCTCTGAGTTATGATGTGAGAGATGGAGTGCTTCACTATGGTTTACTAGGCTCTTCCTATCTGGAgaatgttgttgtcttggagCTTGGATGGACTGTGATCAATGATCTTTTCTCCCACTGGGTTGAGGGGCTGCTTAAGCGATGCCCCAATCTCAAGAAGTTGGTCATTCATGGGATTGTTTCTGAGGCTAAGTCTCATGAAGAATGCCAGATGTTAGCCAATTTCACCAGATTCACGGTTGAGCTGATGAGGAGATACACATATGTAGATCCACATTTTAAGTATGAATAG 1260 0.4262 MDQLPVEVIGNILSHLRAARDVVIASATCRKWRQACCKHLHTLSFSSKDWPIYRDLTTTRLEILITQTIFQTSGLQALSILMEDVDEFSASTVTAWLLYTRETLRQLHYNVKTMPNVNILEICGRHKLETLDLAHNSIAGVEPNYQRFPCLKSLSLSYVSISALDLNLLVSACPKIEALELVNPEIAMSDAQVTIELSSSTLKSVYVEAISLDKFMLEADGLESLHLKDCALEFFELIGKGILKHFKIDDVSVIHLDIGETVENLETVDISNFTIIWPKFYQMISRSLNLKRLRLWDVMFDDEDEVVDLETIATCFPHLSHLSLSYDVRDGVLHYGLLGSSYLENVVVLELGWTVINDLFSHWVEGLLKRCPNLKKLVIHGIVSEAKSHEECQMLANFTRFTVELMRRYTYVDPHFKYE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2350 419 PANTHER F-BOX PROTEIN-LIKE 1 417 - -
Ssu3g2350 419 Pfam F-box-like 2 39 IPR001810 GO:0005515
Ssu3g2350 419 SUPERFAMILY RNI-like 73 381 - -
Ssu3g2350 419 SMART fbox_2 4 45 IPR001810 GO:0005515
Ssu3g2350 419 Gene3D - 1 44 - -
Ssu3g2350 419 SUPERFAMILY F-box domain 1 56 IPR036047 GO:0005515
Ssu3g2350 419 Gene3D Ribonuclease Inhibitor 112 402 IPR032675 -
Ssu3g2350 419 PANTHER - 1 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2350 Ssu-Chr3 74388427 74389686 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2350 - - gmx:100786847 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2350 3 74388427 74389686 Ssu3g2350 3 74388427 74389686 ECH