Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2349 ATGGCACCTCACCAccacattcttcttcttcttctctgcGCCACTCTACAATCTTCTTCAGCTTCACCCTCGGATCACCTCTACGATGTTGGAGATGTTGTCCCATTGTTTGTCAACAAAGTAGGACCCTTGAACAACCCCAGTGAGACATACGAATACTATGATTTGCCATTCTGCACCCCAGACCCAATTGTCAGAAAGAAAGAGTCCCTTGGGGAAGTTCTCAATGGTGACCGTTTGAGCAATGCTTTGTATGAGTTCAAGTTCCGGCAGGAGAAGATTGGTGAGACCTTGTGCCAAAAGAAGCTTACAATTGACCAAGTTGCAATCTTAAAGCAAGCTATAAACCGCGACTTTTACTTCCAGTTTTATCTGGATGATCTTCCATTCTGGGGTTTCATTGGGAAACTTGAAGAGGATGGATGGACTCCTGGTGGCGGAGGACCTAGCTATTACCTTTTTACACATGTTCAATTTGATATTCTTTACAATGGGAATCGAATCATACAAGTAAATGCATTTGGCGATCCAAATCGTGCTGTAGATATTACTGAAGATGTTGGTGTTGATGTTAACTTCACTTATTCAGTTATCTGGAATGCCACTAAAGTACGCTTCGAGAACAGGATGGACAGATACTCGAGAGCTTCATTGATGCCTGTGCATCGGCAAGTTCATTGGTTCTCGTTTGTTAACTCAATTGTCATCATTTTGCTTTTGATTGGTTTGCTTGCCCTGCTTTATATGCGGCATCTGAGTAGTGATTTGAAAAAGTATTCTAATGCAAATGAAGAAGATAAGGAGGTTGGCTGGAAGTCCCTCCATGGCGATGTATTCAGACCTCCTCCAAGCTCATCCATACTTTTTGCCGTTGTGGGAACTGGTACCCAGTTGCTAATCTTGCTTTGTGTCTTGCTGTTTCTTGCTCTTATTGGCACCCTCTATCCCTACAACCGTGGAGGACTGTTAAATTGGCTTGTCTTGCTGTATGCTCTTTCATCTGTTTTTGCTGGCTATACTGCAGCATCCTTCCATGGCCAGTTTGCTGAGAATGGATGGGAAAGGAGTGTTAGTCTAGCAGGGATTCTTTACACTGGACCTGTGTTTGTTGCAGCCTCTATCCTCAACATTGTTGCAATATCATACAGGGCTACAACTGGACTCCCATTGGGTTCCATTATTGTGATTCTTGTTTTATTCACATTTCTAGCCATTCCATTGCTTGCATTTGGTGGAGTGATTGGATACCGTTTTAGATCTAAATTTCAAAGCCCCTCTGCTACAACAAAGAGACATCCAAGAGATATTCAACAGCTTGCTTGGTACAGGAGAACACCATTTCTAATGTTTATTGGGGGTCTTGTCCCTTTTAGTGCAATTGTCCTGCAACTACACCAGGTGTATGCTAGCATGTGGGGCTACAAAATATACACTCTTCCTAGCATTTTGTTTGCCACATTCATCCCTGTCATTGTGATCATTGCACTTGTCAGTATTGGCTTGACATACATTCAACTATCTGTGGAAGACCATGAATGGTGGTGGAGATCAGTGCTGTGTGGTGGCTCAACAGCCATTTTCATGTTTGGGTATTGTATCTACTTCTATGTGAGATCAAATATGAGTGGATTCTTGCAGCTATCCTTCTTTATTGGTTATAATGCATGCCTATGCTATGCGTTCTTCCTAATATTTGGTGCCATTAGTTTCCGAGTTTCATTGCTATTTGTTCGCCTTATATACCATGATGTTAAAAGAGAGTGA 1764 0.4167 MAPHHHILLLLLCATLQSSSASPSDHLYDVGDVVPLFVNKVGPLNNPSETYEYYDLPFCTPDPIVRKKESLGEVLNGDRLSNALYEFKFRQEKIGETLCQKKLTIDQVAILKQAINRDFYFQFYLDDLPFWGFIGKLEEDGWTPGGGGPSYYLFTHVQFDILYNGNRIIQVNAFGDPNRAVDITEDVGVDVNFTYSVIWNATKVRFENRMDRYSRASLMPVHRQVHWFSFVNSIVIILLLIGLLALLYMRHLSSDLKKYSNANEEDKEVGWKSLHGDVFRPPPSSSILFAVVGTGTQLLILLCVLLFLALIGTLYPYNRGGLLNWLVLLYALSSVFAGYTAASFHGQFAENGWERSVSLAGILYTGPVFVAASILNIVAISYRATTGLPLGSIIVILVLFTFLAIPLLAFGGVIGYRFRSKFQSPSATTKRHPRDIQQLAWYRRTPFLMFIGGLVPFSAIVLQLHQVYASMWGYKIYTLPSILFATFIPVIVIIALVSIGLTYIQLSVEDHEWWWRSVLCGGSTAIFMFGYCIYFYVRSNMSGFLQLSFFIGYNACLCYAFFLIFGAISFRVSLLFVRLIYHDVKRE 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2349 587 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 5 7 586 - -
Ssu3g2349 587 Pfam Endomembrane protein 70 50 544 IPR004240 GO:0016021
Ssu3g2349 587 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 7 586 IPR004240 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2349 Ssu-Chr3 74374644 74378365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2349 8 587 Miscellaneous Gene Families AT2G01970 49.577 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2349 K17085 - gmx:100818419 1069.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2349 3 74374644 74378365 Ssu3g2349 3 74374644 74378365 ECH