Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2346 ATGGCAACCTTGTCAACTGTGAAGGTTTCCCCTCATTGCAAGTTTCAAACTCCAAGCAAAAATCAAATCACTGTTGCCACCACAGTGAAGTGCCCTTCTTCTTCTCTTGGGTCTGTGAAGGGTGTTTCCAGATCGTTTGGCCTGAAGGCATCCTCTTCATTTAGAGTCACTGCCATGGCTTCTTACAAGGTTAAGCTGATCGGCCCAGATGGAAAAGAGGATGAGTTTGAAGCGGCTGACGATACTTACATCTTAGATGCAGCAGAGAATGCTGGAGTTGAACTTCCTTACTCTTGCCGTGCCGGAGCATGCTCTACCTGCGCTGGGAAGATTATTGCTGGTTCAGTGGATCAGTCTGATGGCTCATTCCTAGATGACAAGCAACTGAAGGAAGGGTTTGTGCTTACCTGTGTCTCCTATCCAACTGCAGACTGTGTAATTGAAACTCACAAGGAAGGAGAGCTCTACTGA 471 0.4713 MATLSTVKVSPHCKFQTPSKNQITVATTVKCPSSSLGSVKGVSRSFGLKASSSFRVTAMASYKVKLIGPDGKEDEFEAADDTYILDAAENAGVELPYSCRAGACSTCAGKIIAGSVDQSDGSFLDDKQLKEGFVLTCVSYPTADCVIETHKEGELY 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2346 156 CDD fer2 64 148 IPR001041 GO:0051536
Ssu3g2346 156 PANTHER FERREDOXIN 5 156 - -
Ssu3g2346 156 Pfam 2Fe-2S iron-sulfur cluster binding domain 69 142 IPR001041 GO:0051536
Ssu3g2346 156 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 62 153 IPR001041 GO:0051536
Ssu3g2346 156 Gene3D - 59 156 IPR012675 -
Ssu3g2346 156 PANTHER FERREDOXIN 5 156 - -
Ssu3g2346 156 SUPERFAMILY 2Fe-2S ferredoxin-like 57 155 IPR036010 GO:0051536
Ssu3g2346 156 TIGRFAM fdx_plant: ferredoxin [2Fe-2S] 60 156 IPR010241 GO:0009055|GO:0022900|GO:0051537
Ssu3g2346 156 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 99 107 IPR006058 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2346 Ssu-Chr3 74331139 74331609 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2346 K02639 - gmx:100785611 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2346 3 74331139 74331609 Ssu3g2346 3 74331139 74331609 ECH