Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2341 ATGGCGGTGCGGGCCACGGTGTCGCGTTTCCCGATGGACTCCGACGCGCGCGAGGGCTCGGGCCTCCTCTGGGGGGTCACCGTCACGCCCTTCGCCGCCGCCGACGAGAACGGCCGCGCTCCGTCGTATGGCTCCGGCGGCGACCTCTTGCCCCGGTGCGAGAACTGCTGGGCCTACTTCAACACCTACTGCGAGCTCGAGCAGTGGTCCTGGTCCTGCTCCCTCTGCGGCAACCTAAACGGCCTCTCCTCCGACGCCATCGAGCGCTACTCTGGCCCTCAGTCTTGCGCCGAGATGATGTCCTCCTTCGTAGATCTCGAATTGCCTTCGCAGGAATCGTCGGAGGAAGCGGCAATGCCGGCTTGTCCGGTTTATGTTGCTGCTGTTGACTTGTCCTCTTCAGAGGAGTTTCTAGAACTTACCAAAAGTGCATTGCTGGCAGCTCTGGAAGCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACCTTCAGCCACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTggtgaaaaatgttttcatccCTCCTGATGCTGAGGGAACATTACCTATTGAGCTTGAAGATGTCATGCCTTTGTTACAGTTTCTGGCTCCTGTGGAAACTTGTAAGGACCGTATTGCATCTGCACTTGAAACACTTAGACCAACAACTTCATGGGAGAGAACCACGGCAGCAGGTCAAGGGCTGGATGGTGTTCTGATAGGTGGGCGTGGTTTTGGGATGGCAATGGAAGCTCTCTGCAATTACCTTGGATCTGAATATGGGAACACTTTTGCTTTAGCTAGAGTCTTTGCCTTCTTGTCTGGTCCCCCTGATTATGGAGCTGGACAATTGGACACAAGACGATATGGTGAGCAGTATGCAAGCAAAGGAGAGGATGCAGATCGTGCTTTACTCCCGGAGCAGACACCCTTTTATAAAGATCTGGCTGCTGTTGCTGTTCAAGCAGGTGTGTGTGTTGACATATTTGCTGTAACGAATGAGTATACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTGGGGGTTCCTTATTTTTATACACAAGTACTGAAGATTCAACTTTGCCCCAGGACATGTATCGAATGCTGAGTCGACCATATGCTTTTGGTTGTGTCCTGCGGTTAAGAACCTCAACTGAATTTAAACCTGGCAATTCTTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATATGCTGTGATTCTTATGCGACATATGCTTACGACTTCATGTTTGAGAACAATGCTGGATTCTCAAGAACTAGATCAGATGTTCCTACAATTCAGATTGCATTTCAGTATGCAGTTGTAGTTCCTCCTCAGGAACTTTCTAATTCAGGAGGGGTTTCTACAAATAGAACTAAGCATTCCCTTCAGCGTCGGTTAAGGATCCGAACACTGCAGTTTGGTGTTGCTCAGAACATTCATGAACTTTATGATAGCTGTGATCCTGAAGTTGTTCTATCTTTGCTTGTTCACAAGGTTATATTAGCCTCTTTGGAGGAAGGAGTTCGGGAGGGTAGAATTTTGCTTCAAGAATGGCTAGTGATCCTCACAGCTCAGTACAATGATGCATATAAACTTATTCAGTATAGTAATGGAAGTTCCATAAGATCTCAGATTGATGTTGCATTCTCTCAATGTCCTCAATTGCAGCCCCTACCGCGCATAATTTTTGCTCTCCTTCGAAATCCTCTTCTCCGCTTTCATGAAGAAGGTGTTCATCCTGACTATCGCATCTATCTTCAATGCCTTTTCAGCATGTTGGAACCCAGTTCCCTTCATCGTGCTGTGTATCCTGTGTTGACATCATATGCTACTCCAGATAAACAAGCATATCCTCGTCATTCATTGAGTCGTGCAGCACTGATTACCAGTGGCAGTCCGATATTTTTCCTTGATGCATTCACTATTTTGATTGTGTTTTATTCTTCGACTGCAGACCCGACACTTCCTTTTCCTCCACCCCATGATTGTTTGTTAAGGACTACAATCAACAAAGTGAAGCAAGAGAGATGCATCACTCCCAAACTCATTTTTATTCGAGGAGGGCAGGATGATGCCTCAATTTTTGAGAACTTTCTGATTGAAGAGCAGGATGTTGATGGAAGTGGTCTTACCAGTGTGATGGGTTTTGTTTCCTTCCTTGAAGATATTACACAGAAGGTTTTAGAATTCATGAAATAG 2238 0.4616 MAVRATVSRFPMDSDAREGSGLLWGVTVTPFAAADENGRAPSYGSGGDLLPRCENCWAYFNTYCELEQWSWSCSLCGNLNGLSSDAIERYSGPQSCAEMMSSFVDLELPSQESSEEAAMPACPVYVAAVDLSSSEEFLELTKSALLAALEALAPGSLFGLATFSHKLGLYDVQGPIPVVKNVFIPPDAEGTLPIELEDVMPLLQFLAPVETCKDRIASALETLRPTTSWERTTAAGQGLDGVLIGGRGFGMAMEALCNYLGSEYGNTFALARVFAFLSGPPDYGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGSLFLYTSTEDSTLPQDMYRMLSRPYAFGCVLRLRTSTEFKPGNSYGHFFPDPQYENVQHIICCDSYATYAYDFMFENNAGFSRTRSDVPTIQIAFQYAVVVPPQELSNSGGVSTNRTKHSLQRRLRIRTLQFGVAQNIHELYDSCDPEVVLSLLVHKVILASLEEGVREGRILLQEWLVILTAQYNDAYKLIQYSNGSSIRSQIDVAFSQCPQLQPLPRIIFALLRNPLLRFHEEGVHPDYRIYLQCLFSMLEPSSLHRAVYPVLTSYATPDKQAYPRHSLSRAALITSGSPIFFLDAFTILIVFYSSTADPTLPFPPPHDCLLRTTINKVKQERCITPKLIFIRGGQDDASIFENFLIEEQDVDGSGLTSVMGFVSFLEDITQKVLEFMK 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2341 745 Pfam Sec23/Sec24 helical domain 500 612 IPR006900 GO:0006886|GO:0006888|GO:0030127
Ssu3g2341 745 PANTHER OS05G0443300 PROTEIN 1 743 - -
Ssu3g2341 745 SUPERFAMILY Helical domain of Sec23/24 500 616 IPR036175 GO:0006886|GO:0006888|GO:0030127
Ssu3g2341 745 PANTHER SEC24-RELATED PROTEIN 1 743 - -
Ssu3g2341 745 SUPERFAMILY Zn-finger domain of Sec23/24 48 111 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Ssu3g2341 745 Gene3D von Willebrand factor, type A domain 122 379 IPR036465 -
Ssu3g2341 745 Pfam Sec23/Sec24 trunk domain 121 374 IPR006896 GO:0006886|GO:0006888|GO:0030127
Ssu3g2341 745 SUPERFAMILY vWA-like 123 377 IPR036465 -
Ssu3g2341 745 Gene3D - 30 101 - -
Ssu3g2341 745 Gene3D Sec23/Sec24 helical domain 470 629 - -
Ssu3g2341 745 SUPERFAMILY beta-sandwich domain of Sec23/24 3 499 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2341 - - gmx:100807557 1447.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2341 3 74286558 74295636 Ssu3g2341 3 74286558 74295636 ECH