Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2338 ATGAATGTAATGTCAAGAGAGAAAGATATTTGGAATAGGCCTCCGCATCTTGATTTCGTCATTGGTGGTCTTGTTTCAATCTTAAGTAAACTATGCCGTTTGGTAGTGTGGGCACTGGCGATGGGCAAAAGGGTAAAATGGAGCTGGAGCTCGGCGATAATCGGAGCAGCATCAGCGGTGGCAGCAACGGCCCTAATATCGGCCAGACCCAAGGACCCAACCTTCCACCTCATATCCATAAACTTCACTTCTCTCAAGCTCAACTTCCCTCTCCTCGACGCGGAGCTTCTCCTCACCGTCCACGTCACCAACCCCAACATCGCCCCCATCCACTACTCCTCCGCCTCCATGTCCATCTTCTACCAGGGATCCCTCCTCGGCTCGGCTCAGGTCCAAGCCGGCTCCCAGCCCCCCCGCTCCTGCCAGCTCCTCCGCCTCCCCGCCCGCCTCCACGCCCTCCAACTCGCGCACCACGCCACGCGCTTCTTCCACGACGTCGCGCGCCGCGAGATGCTCCTCGACGCCGCCGTCGACATTGCCGGCACCGCCAGGGTCGTGTGGTGGGACCACCGCTTCAAGGTCCACGTGGACAGCCACGTCACCGTCGATCCCCTCTTTCTCGACGTCATCGATCAGGAAAACACCTCCGAACTTGAAGTCTTCACCGCGGCGCCGTAG 678 0.5929 MNVMSREKDIWNRPPHLDFVIGGLVSILSKLCRLVVWALAMGKRVKWSWSSAIIGAASAVAATALISARPKDPTFHLISINFTSLKLNFPLLDAELLLTVHVTNPNIAPIHYSSASMSIFYQGSLLGSAQVQAGSQPPRSCQLLRLPARLHALQLAHHATRFFHDVARREMLLDAAVDIAGTARVVWWDHRFKVHVDSHVTVDPLFLDVIDQENTSELEVFTAAP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2338 225 Gene3D - 56 204 - -
Ssu3g2338 225 Pfam Late embryogenesis abundant protein 99 200 IPR004864 -
Ssu3g2338 225 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 42 210 - -
Ssu3g2338 225 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 42 210 - -
Ssu3g2338 225 SUPERFAMILY LEA14-like 62 201 - -
Ssu3g2338 225 SMART why 80 196 IPR013990 GO:0009269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2338 Ssu-Chr3 74242923 74245189 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2338 - - gmx:100782945 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2338 3 74242923 74245189 Ssu3g2338 3 74242923 74245189 ECH