Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2332 ATGGCTATCTTCTACGCTCTGGTGGCCAGAGGCACGGTGGTGCTGGCGGAGTTCAGCGCCGTCACCGGCAATACCGGCGCCGTGGCCCGCCGCATCCTCGAGAAGCTTCCGGCGGAATCCGACTCCAGGCTCTGCTTCTCTCAGGATCGCTACATCTTTCACATACTCCGATCCGACGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGAACTACAGTAGAGTTGCCAATTATGCACCAGCTTATGCAATGAATGAtgagttttcaagggttttgcaTCAGCAAATGGAATTCTTTTCTAGTAATCCAAGTGCCGATACCCTCAGTCGTGTGAGGGGTGAAGTTGGTGAGATACGCACTATCATGGTGGACAATATCGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTTGTTGATAAGACAGCAACAATGCAAGACAGTACATTTCACTTTAGGAAACAGTCAAAGCGCCTTCGAAGAGCTCtttggatgaaaaattttaaactccTGGCCTTATTGACATGCTTGATTGTTATcgttctttatttaataattgctGCTTGTTGTGGAGGACTCACTCTACCGTCCTGCAGATCCTAA 663 0.4449 MAIFYALVARGTVVLAEFSAVTGNTGAVARRILEKLPAESDSRLCFSQDRYIFHILRSDGITYVCMANDTFGRRIPFSYLEDIQMRFMKNYSRVANYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLSRVRGEVGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSTFHFRKQSKRLRRALWMKNFKLLALLTCLIVIVLYLIIAACCGGLTLPSCRS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2332 220 ProSitePatterns Synaptobrevin signature. 144 163 IPR001388 GO:0016021|GO:0016192
Ssu3g2332 220 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 219 - -
Ssu3g2332 220 CDD R-SNARE 125 184 - -
Ssu3g2332 220 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Ssu3g2332 220 Pfam Synaptobrevin 124 211 IPR042855 -
Ssu3g2332 220 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Ssu3g2332 220 Gene3D - 125 209 - -
Ssu3g2332 220 Gene3D Longin domain 1 124 - -
Ssu3g2332 220 PRINTS Synaptobrevin signature 131 150 IPR001388 GO:0016021|GO:0016192
Ssu3g2332 220 PRINTS Synaptobrevin signature 151 170 IPR001388 GO:0016021|GO:0016192
Ssu3g2332 220 PRINTS Synaptobrevin signature 187 206 IPR001388 GO:0016021|GO:0016192
Ssu3g2332 220 CDD Longin 4 118 IPR010908 -
Ssu3g2332 220 SUPERFAMILY SNARE fusion complex 121 188 - -
Ssu3g2332 220 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Ssu3g2332 220 PANTHER SNARE PROTEINS 1 219 - -
Ssu3g2332 220 SMART Longin_2 28 110 IPR010908 -
Ssu3g2332 220 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 126 186 IPR042855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2332 Ssu-Chr3 74130441 74134075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2332 1 220 Miscellaneous Gene Families AT5G22360 85.068 4.04e-143 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2332 K08515 - gmx:100780787 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2332 3 74130441 74134075 Ssu3g2332 3 74130441 74134075 ECH