Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2328 ATGACTCGCGTTTTGGTTCAGAGGGGTTCCTCCAGTGGTTCTTCGTCGAACCCGAACCGGGGTGGTGGTTCTTCTTCAAATTCCTCGGCGCGGGCGGAGCCGCAGGTTTCGGTTTTGCCGGAGAATAGCGACgaggttgctgttgttgttgttgttgttgctgcggAGGAGGTTTTGGAGAGTGGTGAGTGCAATAAGGGGAGGAGTGAGGAGCTTTTGATTGAGCATGGTGGTGATGGTTCGTGTGATGATGACGTGGCTGGTTCTGTTGTTGTGGAGAGTGATGTGAGGGAGGAGATTGTGAAGGGGTTGAGTGGGCTGAGAGTTGGTGAAAGAGTGGTTTCGGAGAGCGAGGGTTCGAGTGGGGATTCTTCTTCCCCTcctgttggtggtggtggtggttcgTGTCCCCCGCCGCCTCCGGTGCCACCTCCCAAGCCGTCTGTGGCGGGGAGCTTGAATTCAAGGAGAAGCGGGGGTTTGAATTCCGGCAGTGTAGGATCGTCGAGGAGGGTGGCGTCTGCGTGGCCTGTTGTTTTGGCTAGGACGTCGCCTGCTGGGTCTAGGCCGTCTTCTCCCAGGTCACATAATGAAAGTGAGGGGTATAATAGTGCTGATGAACAGAAGCCGTGCCTGGTTTCATCTTATGATGATTTTGAAAGGGAGCGGCAGTTTGAAATTGATATCAGAAGGGCAAAGggttttgaagtaaaaaaaatgatggagGATGGAAATTGTCTTTTCCGAGCTGTTGCAGATCAGGTGTATGGGGACTCTGAAAATTATGATTTGGTCAGACAGATGTGCATAGATTATATGGAGCAGGAGAGAGATCACTTTTCTCAGTTTATAACTGAAGGCTTCATATCGTACtgtaagagaaaaagaagagataagGTCTATGGAAACAATGTTGAGATCCAAGCCATGTGTGAAATGTATAATCGCCCAATTCACATATACTCCTACACTACAGAACCTATCAATATCTTTCATGGAAGCTATAACACTGACACACCGCCAATTCGACTGAGTTATCATCACGGGAATCATTACAATTCCCTTGTTGACCCACGGCGCTTGACAATTGGTGCTGGGCTTGGGTTTAACTGTCTTCGTGGAACAAATGTTGACAAGGATCAAGTCAAGGCTGCTATTAAAGCTCAACAAGACCAACAGATCAATAatGCACTTTTAGCTGAGGGTCGGTTTTACTCTGATCTTGAGCTCACAGAAAAGGAAATAGAACGCATGGTAATGGAAGTTTCTCGAGCTGAGTACCTTGCAGATAGTACATTTAAGCAGCAGCTTGGCGATAGAGAATCCTCTACGTCAAATGCTGAACCATCATCTTCTGGAGCAACAGGATCATCCGGCACTGATCGCAAAATGGAACATGGGAAAGAGCATGGTTCTGATCTTAGTAGCAGTATGCAGATTTTACTATCGATGGGATTCACTTACATGCAAGCAATTGAGGCTTACAGCATATTTGGGGACGATGTTGATTCCATGGTTTGTTACCTGTTAGAAACTGGCAGTAGCAGCAGACGTAAAGGCAAGGCCACTGAATGA 1575 0.4451 MTRVLVQRGSSSGSSSNPNRGGGSSSNSSARAEPQVSVLPENSDEVAVVVVVVAAEEVLESGECNKGRSEELLIEHGGDGSCDDDVAGSVVVESDVREEIVKGLSGLRVGERVVSESEGSSGDSSSPPVGGGGGSCPPPPPVPPPKPSVAGSLNSRRSGGLNSGSVGSSRRVASAWPVVLARTSPAGSRPSSPRSHNESEGYNSADEQKPCLVSSYDDFERERQFEIDIRRAKGFEVKKMMEDGNCLFRAVADQVYGDSENYDLVRQMCIDYMEQERDHFSQFITEGFISYCKRKRRDKVYGNNVEIQAMCEMYNRPIHIYSYTTEPINIFHGSYNTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFNCLRGTNVDKDQVKAAIKAQQDQQINNALLAEGRFYSDLELTEKEIERMVMEVSRAEYLADSTFKQQLGDRESSTSNAEPSSSGATGSSGTDRKMEHGKEHGSDLSSSMQILLSMGFTYMQAIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2328 524 MobiDBLite consensus disorder prediction 435 459 - -
Ssu3g2328 524 MobiDBLite consensus disorder prediction 132 148 - -
Ssu3g2328 524 PANTHER OTU DOMAIN CONTAINING PROTEIN 26 488 - -
Ssu3g2328 524 PANTHER OTU DOMAIN-CONTAINING PROTEIN 5-LIKE ISOFORM X1 26 488 - -
Ssu3g2328 524 MobiDBLite consensus disorder prediction 183 207 - -
Ssu3g2328 524 MobiDBLite consensus disorder prediction 112 168 - -
Ssu3g2328 524 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 471 512 IPR015940 -
Ssu3g2328 524 SUPERFAMILY UBA-like 462 513 IPR009060 GO:0005515
Ssu3g2328 524 SUPERFAMILY Cysteine proteinases 222 358 IPR038765 -
Ssu3g2328 524 MobiDBLite consensus disorder prediction 1 41 - -
Ssu3g2328 524 MobiDBLite consensus disorder prediction 1 36 - -
Ssu3g2328 524 Gene3D - 217 368 - -
Ssu3g2328 524 MobiDBLite consensus disorder prediction 433 474 - -
Ssu3g2328 524 MobiDBLite consensus disorder prediction 151 168 - -
Ssu3g2328 524 ProSiteProfiles OTU domain profile. 235 358 IPR003323 -
Ssu3g2328 524 MobiDBLite consensus disorder prediction 185 199 - -
Ssu3g2328 524 Pfam OTU-like cysteine protease 243 352 IPR003323 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2328 Ssu-Chr3 74097106 74104898 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2328 K12655 - gmx:100780250 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2328 3 74097106 74104898 Ssu3g2328 3 74097106 74104898 ECH