Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2327 ATGACTATGGCGCCGAGAAAACCGGGCGACCGTGAAATGCTGTTCGACTCCGTCATCGCGCTCGTGTTCATCCTCATCGCCTGCGTCGACCTCTGCGACGGCGCCACCGTCGTCGATGTCTACCGCCTCATCCAGTACGACATGTCCGGCGTCCCCTTCGGATCTCGACTCGCCAGCCTCAACCATCACGCCGCTTCTCTCCACTTCGCTCCCCACGCCGATCTCTCGCGCACCGTTCTCCTCATACCTCTTCGCGAACTCAACATGTCTTTCGTCAAAGAATATATTGTTGAAAGCAAGCCTCTTGGGGGTTTAATCTTTTTGCTTCCCCGGATGTTCagttttgaaaacaaagatGGTATGGAAAGTAATCATCAAGATGTGAGTAAAGAACTGCTGAAGAATGCATTGGCTGAACTTGAACAAATACTTATACACGCCAACTTACCTTATCCTGTTTATTTTGCATTTGAGGATGACAACATTGATGCTGTGTTAACTGATATCAAGAAGAATGATGTCACTGGTCAGCCTGCTACTGCAACAACTGGCGGATACAAATTTGTTGTTTCTGCTCCAGAACCAAAGAAAGTTGTATCTCCTCCCATTACAAATATTCAGGGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCATTGCGATAGTGGCAtcatatgacacctttgggGCTGCTCCTGCATTATCAGTGGGGAGCGATAGTAATGGAAGTGGCATTGTGGCTCTTCTAGAAGTAGCTAGGTTGTTTTCTCTCTTATATTCTAATCCAAAAACAAGAGGACAATACAATCTGCTGTTTGGGCTAACGTCTGGTGGGCCTTACAACTACAATGGAACCCGTAAGTGGCTTCGAAGCTTTGATCAACGTCTGCGTGAGAGCATTGACTATGCTATTTGCTTAGATAGTATTGGCTCCTGGGAAAATGAATTGTGGATTCATGTGTCTAAGCCTCCGGAAAATGCCTTTATTAAGAAAATTCTGGAAGATTTTTCAAGTGTTGCAGAAGAATTAGGCTTTAAAGTGAATCTGAAgcataagaaaataaacatttccAATCCTCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACTGCTGCCACCCTCTCTGAACTCTCTACAGCACCTGAATTGCTAGAAAAGACTGGTGGTTTGGTTGATGGCAGGCATTTTGTCAATGAAGCGGCTATTGTCAGAAGTGTGAAATTAATTGCTGAGAGTCTTGCGAGGCATATTTATGGACATCAAGGAAAGAACATTCAGATCTTTGCAGACAACAGTAACTTGGCTGTCAATCCTTCTTATGTTCGGTCATGGTTAGATGTTTTGTCCCAAACACCTCGAGTAgctccatttttctcaaaagatGATCCTTTTGTCATGGCACTGAAAAAGGAATTAGAAGACCATACTGATGAGGTAAATCTACATAGGGATGTGTTAGATGGGATGTTCACTTTCTATGATTCAACTAGGGCAAAGCTGAACATATATCagGTTGCCAGTGTCACATTTGACTTGCTGTTGCTTTTAGTATTGGGATCGTATTTGATTGTCCTCTTCAGTGTCTTGGTCATCACCACTAGGGGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTGAAAACTGCATAA 1695 0.4254 MTMAPRKPGDREMLFDSVIALVFILIACVDLCDGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFAPHADLSRTVLLIPLRELNMSFVKEYIVESKPLGGLIFLLPRMFSFENKDGMESNHQDVSKELLKNALAELEQILIHANLPYPVYFAFEDDNIDAVLTDIKKNDVTGQPATATTGGYKFVVSAPEPKKVVSPPITNIQGWLAGLKTDDDAHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTRKWLRSFDQRLRESIDYAICLDSIGSWENELWIHVSKPPENAFIKKILEDFSSVAEELGFKVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPELLEKTGGLVDGRHFVNEAAIVRSVKLIAESLARHIYGHQGKNIQIFADNSNLAVNPSYVRSWLDVLSQTPRVAPFFSKDDPFVMALKKELEDHTDEVNLHRDVLDGMFTFYDSTRAKLNIYQVASVTFDLLLLLVLGSYLIVLFSVLVITTRGLDDLISLFRRPPSRKVKTA 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2327 564 ProSitePatterns EF-hand calcium-binding domain. 245 257 IPR018247 -
Ssu3g2327 564 PANTHER NICALIN 10 563 - -
Ssu3g2327 564 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Ssu3g2327 564 PIRSF Nicalin 8 559 IPR016574 GO:0009966|GO:0016020
Ssu3g2327 564 CDD M28_nicalin_like 137 430 - -
Ssu3g2327 564 Pfam Nicastrin 225 362 - -
Ssu3g2327 564 SUPERFAMILY Zn-dependent exopeptidases 189 387 - -
Ssu3g2327 564 Coils Coil 475 495 - -
Ssu3g2327 564 PANTHER NICALIN 10 563 IPR016574 GO:0009966|GO:0016020
Ssu3g2327 564 Gene3D Zn peptidases 120 427 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2327 7 562 EF-hand Containing Proteins AT3G44330 72.093 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2327 - - gmx:100778865 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2327 3 74073249 74095427 Ssu3g2327 3 74073249 74095427 ECH