Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2319 ATGGCAAGCGTTTCTGAGGTCTCAGCTCCTGTTAGAAGGCTTGAGGGCAAAGTAGCCATTATCACTGGTGGTGCGAGCGGCCTAGGTGCGGCCACTGCAAGACTCTTCTCTAAGCACGGAGCACACGTTGTGATAGTTGACATTCAAGACGATTTGGGTCTCTCTGTTTGCAAAGACTTGGAATCCGCTTCCTATGTCCATTGTGACGTGACAAACGAAGAGGACGTCGAAAACGCCGTGAACACGGCGTTTTCCAAGCATGGCAAACTAGATATCATGATGAATAACGCTGGCATAATTGATGAGATCAAAACAAGCATACTTGACAACAGCAAGTCTGATTTTGAGAGAGTGATAAGTACGAACTTGGTTGGTGCTTTTCTGGGAACAAAGCACGCTGCAAGGGTCATGATCCCTGCTAAAAGGGGCTGCATAATTAACACAGCTAGTGTTGCTGGATGCATAGGTGGAGGGGCTACACATGCCTACACAAGTTCAAAGCACGCCCTAGTGGGACTGATGAAAAACACTGCGGTGGAACTTGGACAATTTGGTATTCGGGTAAATTGCATTTCCCCTTATCTGGTTGCCACACCGTTGACTAAGAAATATTACAATATTGATGAAGACAGCATTCGTGAGATATATTCCAACCTAAAAGGTGCTCATCTTGTGCCTAACGATGTGGCCGAAGCTGCTCTTTACTTGGCAGGTGACGAGTCCAAGTATGTTAGTGGTCACAATCTTGTGTTAGATGGAGGGTACACTGATGTAAATGCAGGATTTTCTGTGTTTGGGCAGTCgaagtaa 810 0.458 MASVSEVSAPVRRLEGKVAIITGGASGLGAATARLFSKHGAHVVIVDIQDDLGLSVCKDLESASYVHCDVTNEEDVENAVNTAFSKHGKLDIMMNNAGIIDEIKTSILDNSKSDFERVISTNLVGAFLGTKHAARVMIPAKRGCIINTASVAGCIGGGATHAYTSSKHALVGLMKNTAVELGQFGIRVNCISPYLVATPLTKKYYNIDEDSIREIYSNLKGAHLVPNDVAEAALYLAGDESKYVSGHNLVLDGGYTDVNAGFSVFGQSK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2319 269 Gene3D - 3 266 - -
Ssu3g2319 269 PANTHER MOMILACTONE A SYNTHASE 7 262 - -
Ssu3g2319 269 CDD secoisolariciresinol-DH_like_SDR_c 13 256 IPR045309 GO:0016616
Ssu3g2319 269 Pfam Enoyl-(Acyl carrier protein) reductase 23 256 - -
Ssu3g2319 269 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 256 IPR036291 -
Ssu3g2319 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Ssu3g2319 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Ssu3g2319 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Ssu3g2319 269 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 262 - -
Ssu3g2319 269 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 150 178 IPR020904 GO:0016491
Ssu3g2319 269 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Ssu3g2319 269 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Ssu3g2319 269 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Ssu3g2319 269 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Ssu3g2319 269 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Ssu3g2319 269 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2319 Ssu-Chr3 73860688 73861611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2319 10 256 Acyl Lipid Metabolism Gene Families AT1G62610 31.418 1.12e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2319 - - gmx:100787995 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2319 3 73860688 73861611 Ssu3g2319 3 73860688 73861611 ECH