Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2318 ATGGGAAGTGTTTCGTTGGTCTCCGCTTCCGTTGCCAGAAGGCTAGAAGGGAAGGTGGCGTTGATCACTGGCGGCGCAAGTGGGATAGGCGAGTGTACTGCGAGACTCTTCTCCAAGCATGGAGCCAAAGTGGTGATTGCTGACATCCAAGACGAGTTGGGCCGCTCTGTTTGCAAAGACTTGGACCCATCCTCAGCTTCTTACGTTCACTGCGATGTGACAAAAGAGGAACACATCGAGCGTGCCGTGAACACAACCGTTTCCAAGTTCGGTAAACTAGACATCATGTACAACAACGCAGGCATAATCGGTGCGTGGAACCCCAGCATAGTGCACAACGAGAAGTCCCATTTTGAGGAAGTGATTAGCGTCAACTTGGTCGGTGTGTTTCTGGGAATCAAGCACGCTGCGAGGGTGATGATCCCTTCTCGACGTGGCAGCATAATTGCAACGGCAAGTGTGTCTGGACGCCTAGGTGGCATGGCTTCGCATGCCTACACGAGCTCGAAACATGGCATCGTGGGGCTCGTGCGAAACACTGCTGTGGAGCTTGGACCGTTTGGGATCCGCGTGAATTGTGTGTCTCCTTATGCAGTTCCTACGCCCATGAGTAGGACCCACCTTAACATCGATGATGAGGGGATTGCTGGGCTTTATTCCAACCTTAAAGGGACTGTTCTTAAGCCGGATGATGTGGCTGAAGCTGCTCTTTACTTGGGAAGTGATGAGTCCAAGTATGTAAGCGGACACGACCTTGTAGTGGATGGGGGCTTCACTGTTGTAAATCCTGGTTTGTGCGTGTTTGGGCAATCGGTGTAA 819 0.5201 MGSVSLVSASVARRLEGKVALITGGASGIGECTARLFSKHGAKVVIADIQDELGRSVCKDLDPSSASYVHCDVTKEEHIERAVNTTVSKFGKLDIMYNNAGIIGAWNPSIVHNEKSHFEEVISVNLVGVFLGIKHAARVMIPSRRGSIIATASVSGRLGGMASHAYTSSKHGIVGLVRNTAVELGPFGIRVNCVSPYAVPTPMSRTHLNIDDEGIAGLYSNLKGTVLKPDDVAEAALYLGSDESKYVSGHDLVVDGGFTVVNPGLCVFGQSV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2318 272 PANTHER MOMILACTONE A SYNTHASE 9 264 - -
Ssu3g2318 272 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Ssu3g2318 272 PRINTS Glucose/ribitol dehydrogenase family signature 222 242 IPR002347 -
Ssu3g2318 272 PRINTS Glucose/ribitol dehydrogenase family signature 140 156 IPR002347 -
Ssu3g2318 272 PRINTS Glucose/ribitol dehydrogenase family signature 166 185 IPR002347 -
Ssu3g2318 272 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Ssu3g2318 272 PRINTS Glucose/ribitol dehydrogenase family signature 187 204 IPR002347 -
Ssu3g2318 272 Pfam Enoyl-(Acyl carrier protein) reductase 24 259 - -
Ssu3g2318 272 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 153 181 IPR020904 GO:0016491
Ssu3g2318 272 CDD secoisolariciresinol-DH_like_SDR_c 14 259 IPR045309 GO:0016616
Ssu3g2318 272 Gene3D - 5 268 - -
Ssu3g2318 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 IPR002347 -
Ssu3g2318 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 IPR002347 -
Ssu3g2318 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Ssu3g2318 272 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 261 IPR036291 -
Ssu3g2318 272 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 9 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2318 Ssu-Chr3 73829914 73830998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2318 11 260 Acyl Lipid Metabolism Gene Families AT1G24360 28.571 1.80e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2318 - - gmx:100810754 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2318 3 73829914 73830998 Ssu3g2318 3 73829914 73830998 ECH