Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2312 ATGTGCTTTTTTGCTGGAAATGATTTTCTGCCCCACATGCCATCTTTGGAAATTCACGAGGGGGCTATTGATTTGCTAATGACTGTTTACAAGAAAGAATTCAATATACTTGGAGGATATCTTGTGGACATGAGCAGGATTGGAGAGAAAAATGCTGCTTTTGTGAAGTTATCAAGagttgaaaaatttatacttatggTTGGTACATATGAAGAAAAAATCTTTAAGAAAAGATCTGAAATACGAGAACGAAAATTGCGAAAGATTATTCAAGAATACGAGGATGCTAAGGAGGAAGAAAAGAATGCAACATGTTACTCAGATCTTGACGATGAAAATGCTTCTGATTGTACTCTTCTGATTAACAAGGCAACAGATTcaaaaaatttgtcttttttggtCAATAATGTTTCAGCTACGCGTGCTGAAATTGAGCAGAACACAAAGGATTTAAAAGATGAATTGAAGAAATGTATTAGAGAAAAATGTGAATTGTTTAAGAGTGGGGAGTTCCTAACGGATAAGATAAAATTGGCAACCCCTGGTTGCAAAGAAAGATATTATAAAGCGAAGTTCTCTGTAGAGGGCCCTACTGACATTGAGtgcaaaaggaaagaaataGTTCAGAAGTACACCGAAGGATTGGTGTGGGTTCTTCAATACTATTTTTCAGGAGTTGCTTCGTGGACATGGTTTTATCCATTCCACTATGGTCCATTTGCTTCTGACTTCAAGGGCATGGGTCAGGtgagaataaaatttgaaaaagatgtCCCATTCTTACCACTTGCTCAACTTATAAGTGTCCTGCCTCCGGCCAGTGCTCATGCACTTCCAAAAGCCTATGCTCAATTGATGCTAGACGAGAACTCTAGAATATTTGACTTTTATCCTCAAGATTTTGAAGTTGATACCGAAGGAAAGCGCTTCACGTGGCAGGGTATCTGCAAACTTCCATGGATAGATGATGGACGGCTTGTGGCTGAAACCAGAGAACTCAAAAATGAATTATCTGAAAATGAGGCCATAAGAAATTCAGTCAAATCTGATAGCTTGTTTGTTAGAAGAGCTAGCAAATTAGCAGAGAAAATTGGCTCTCTTTCTCCAATCAACAAGTTAGATACAAGAATAAGTGACGGCATTGGGGGTATCATAAGTCTTTGCCACAACTTCGTTGGGAAGCCTTCCTCGGACATTTGTGACAACAAAGAAGAAGATTGTGTCTTATGTGTCTATTACGAGCTTCCTGATGGTAGTAATCATATTCCTCGTTTACTATCGGGTGTGAACCTTCCAGAGAAGACAATCTTCGAAGGTGACATTATGGAAACAGAACGCTGGCATGAATGTCAGCAATATGGTCGTTTTGAGAGGGGGAAGAGTGAAAACATGAGCAGTACTTCAAGGTTTTCCTCAAATGCAACTAGCCAACATGCAAGGAGCTTTTCATCAAATACACCTACCTCCATTTACGAAAGTGCTGGTGTTGGATGGGGTTCAGGTAGAGGGAAAAGAACTGATACAATGGCAAATGAGAGAATGCCCTTTCATAAACAACATAGGGATGCGGGATCTTATCATGTCACTTCTACTAGAGACACGAGATCAGAGCACCTTGTGGACAGCTTTAGACAATTCAGAATATCAGAGCCGAATAATCATTTTCCAAGGCCTGGTGGCAGTTCTCAGTTTCGACCATATAATAATGGTTACATGAATCAGTCGAAACATGCTCCTTATCATCAAGGTTCACAATATAATAATCGTTAcatgaatcaatcaaaaaatgCTCCATATCATCCAGGTTcacaatataataatgtttaCATGAATCAGTCAAAAAATGCTCCTTATCATCAAGGTCACAATATGAGACCGTGCCTTTTGGTCGGGGACAAGGTAGGGGTGTATCTAGTAGCAGCTCATTGCGGCCACAATGTAGTGGTGGAAAATCTTACCGAATGA 1965 0.3786 MCFFAGNDFLPHMPSLEIHEGAIDLLMTVYKKEFNILGGYLVDMSRIGEKNAAFVKLSRVEKFILMVGTYEEKIFKKRSEIRERKLRKIIQEYEDAKEEEKNATCYSDLDDENASDCTLLINKATDSKNLSFLVNNVSATRAEIEQNTKDLKDELKKCIREKCELFKSGEFLTDKIKLATPGCKERYYKAKFSVEGPTDIECKRKEIVQKYTEGLVWVLQYYFSGVASWTWFYPFHYGPFASDFKGMGQVRIKFEKDVPFLPLAQLISVLPPASAHALPKAYAQLMLDENSRIFDFYPQDFEVDTEGKRFTWQGICKLPWIDDGRLVAETRELKNELSENEAIRNSVKSDSLFVRRASKLAEKIGSLSPINKLDTRISDGIGGIISLCHNFVGKPSSDICDNKEEDCVLCVYYELPDGSNHIPRLLSGVNLPEKTIFEGDIMETERWHECQQYGRFERGKSENMSSTSRFSSNATSQHARSFSSNTPTSIYESAGVGWGSGRGKRTDTMANERMPFHKQHRDAGSYHVTSTRDTRSEHLVDSFRQFRISEPNNHFPRPGGSSQFRPYNNGYMNQSKHAPYHQGSQYNNRYMNQSKNAPYHPGSQYNNVYMNQSKNAPYHQGHNMRPCLLVGDKVGVYLVAAHCGHNVVVENLTE 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2312 654 PANTHER OS11G0157000 PROTEIN 1 480 - -
Ssu3g2312 654 Coils Coil 76 103 - -
Ssu3g2312 654 Pfam Xrn1 helical domain 1 441 IPR041412 -
Ssu3g2312 654 Gene3D - 251 347 - -
Ssu3g2312 654 Coils Coil 134 161 - -
Ssu3g2312 654 PANTHER 5'->3' EXORIBONUCLEASE 1 480 IPR027073 -
Ssu3g2312 654 MobiDBLite consensus disorder prediction 459 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2312 Ssu-Chr3 73728473 73744005 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2312 - - gsj:114379404 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2312 3 73728473 73744005 Ssu3g2312 3 73728473 73744005 ECH