Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2309 ATGGTTCCTCTCGTAACAATAAGAGTAATAGTGCTCCTCTTAGGTGCCACACTCCAAAGCAAGCCCGTGGCTGTGGAGGCTTTTCCACTATACACGAGTGACCGGTGGATTGTGGACGAAAGTGGGAAGAGGGTGAAGCTAGCGTGTGTGAATTGGGTGTCCCATTTGGATGCCGTGGTCGCTGAGGGCTTAAGCCAACAGCCTTTGGATGTGATTTCCAAGAGAATCAAGTCCATGGGGTTCAACTGTGTAAGACTCACATGGCCACTTCTCTTGCTCACCAATGACTCTCTTGCCTCTCTCACCGTGAGAAACTCTTTCCAAAATCTTGGCCTGCTTCAATCCATTAATGCTGTCCAAGCCATCAACCCCTCCATCATCGATCTTCCCCTCATCAAAGCTTACCAGGCAGTGGTGAAAAGCCTAGGAGACAACGATGTAATGGTGATTTTGGACAACCACGTGACCCAGCCAGGGTGGTGCTGCAGTAACTTGGACGGCAATGGCTTCTTCGGGGATCAGTATTTCGATCCAGACCTTTGGATTATGGGCCTTACCAAGATGGCCACCATTTTCAAAGGGGTGACTAATGTGGTAGGCATGAGCTTGAGAAATGAGCTGCGAGGTCCTAAACAAAATGTCAATAATTGGTACAGgTACATGCCAAAAGGAGCAGAAGCCGTGCATGCCGCGAATCCAGATGTTCTTGTGATTCTGTCTGGCCTAAATTTTGATACGGACCTATCATTCATTAGAAACCAAGCAGTGAAACTCGGCTTCAATGGGAAACTAGTGTTCGAGGTGCACTGGTATAGCTTCAGTGACGGTCAAGCATGGGCTTCGGGGAATCCAAACCAAGTGTGTGGGCAAGTCACAGGGAACGTGATGAGAAGGGCAGGGTTCTTGTTGGACCAAGGGTGGCCATTGTTTGTGAGTGAGTTTGGGGTGGACTTGAGAGGCACAAGTGTGAATGACAACAGGTACATCAATTGCTTCATGGCACTGGCAGCCCAGCTTGACTTGGATTGGGCCTTGTGGACACTGGTTGGGAGTTATTACATTAGACAAGGGGTTGTTGGAATGATAGAGTATTTTGGTATTCTCAATTCGGATTGGACCGAGGTTAGGAACACAAGTTTCTTGCAAGGCATCTCAGTTATTCAATTTCCTTTTCGAgGGCCAGGGCTATTGGAAGCTAAACCATACAAAGTGATTTTTCACCCATTGACAGGTCTTTGCATATTAAGAAAGTCACTCGTTGACCCTTTGAGGTTGGGACCTTGTTCTAATTCTGATGGATGGGAATACACTGACCAGAAGATACTATCAATAAAGTGTATATATTTCTGTTTACAAGCAGAGGGAGAAGGGAAGCAAGCAAAAATTGGGAATATATGTTCAGGTCCCAATTCAAGATGGGAAATGATCTCTGATTCAAAGATGCACCTCTCAAGTCAAATCAACAATGCTTCTACTGTGTGTCTTGATGTAGACACCAACAACATCATTGTCACCAATACATGCAAATGCCTGAGCAAAGATAACACGTGTGACCCTAGAAGCCAGTGGTTCAAACTTGTTAACAGCACAAGGAAGTCAACCTCAACATTATTTATAGAACCAATGTTTAGTTCCATGGAAAAAGAAGTTTCTGGAAACCATTGA 1665 0.4547 MVPLVTIRVIVLLLGATLQSKPVAVEAFPLYTSDRWIVDESGKRVKLACVNWVSHLDAVVAEGLSQQPLDVISKRIKSMGFNCVRLTWPLLLLTNDSLASLTVRNSFQNLGLLQSINAVQAINPSIIDLPLIKAYQAVVKSLGDNDVMVILDNHVTQPGWCCSNLDGNGFFGDQYFDPDLWIMGLTKMATIFKGVTNVVGMSLRNELRGPKQNVNNWYRYMPKGAEAVHAANPDVLVILSGLNFDTDLSFIRNQAVKLGFNGKLVFEVHWYSFSDGQAWASGNPNQVCGQVTGNVMRRAGFLLDQGWPLFVSEFGVDLRGTSVNDNRYINCFMALAAQLDLDWALWTLVGSYYIRQGVVGMIEYFGILNSDWTEVRNTSFLQGISVIQFPFRGPGLLEAKPYKVIFHPLTGLCILRKSLVDPLRLGPCSNSDGWEYTDQKILSIKCIYFCLQAEGEGKQAKIGNICSGPNSRWEMISDSKMHLSSQINNASTVCLDVDTNNIIVTNTCKCLSKDNTCDPRSQWFKLVNSTRKSTSTLFIEPMFSSMEKEVSGNH 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2309 554 CDD RICIN 402 515 IPR000772 -
Ssu3g2309 554 SUPERFAMILY Ricin B-like lectins 399 526 IPR035992 -
Ssu3g2309 554 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 16 542 - -
Ssu3g2309 554 Gene3D Glycosidases 28 387 - -
Ssu3g2309 554 SUPERFAMILY (Trans)glycosidases 28 377 IPR017853 -
Ssu3g2309 554 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 16 542 - -
Ssu3g2309 554 Pfam Cellulase (glycosyl hydrolase family 5) 67 348 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2309 Ssu-Chr3 73690544 73695033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2309 27 540 Glycoside Hydrolase AT1G13130 61.079 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2309 - - gmx:100816102 962.214