Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2301 ATGGCATCTCCAAACACAGACCAGGAGAAAGCAGGGGTACTTGGTCGAGTACTGGCCTTGCCAAAAGTTGTTAAGGAGAAGGTGTTGGGCATTTGTAGGTTAACAAAAGAGATAGCCCAAGATGATCCTAGAAAAGTGATTCATTCACTAAAAGTGGGACTTGCAATCTCGTTggtttctcttttctattaCTATCAACCACTATACGAGAATTTTGGTCTTTCAGCTATGTGGGCTGTGATGACTGTAGTGGTGGTTTTTGAGTACACAGTCGGAGCCACTCTAGGAAAAGGTTTGAATAGGACAATTGCAACGTTGGCCGCTGGTGCTCTTGGTGTTGGGGCTCACTACTTAGCTAGCCTATCTGGAACAACAGGGGAACCCATATTGATTGGCGCGTTTGTCTTCGTGCAagCTGCCATAGCATCATTTATAAGGTTTTTTCCGAAAGTGAAGGCAAGATATGATTATGGGATGCTTATATTCATCTTGACATTCTCTTTGATATCCGTATCTGGGTTTCGAGACGATGAAGTGTTGGAAATGGCACACAAGAGGCTATCAACCATATTTATAGGGGGTTCGGCTTGTGTGATGATTTCCATTTTTGTTTGTCCCGTGTGGGCTGGTGAAGAGTTCCACTATTCCATTGCTCACAAGTTGGAAATACTTGGCGACTTCTTGGAAGCTTTTGTACGTGAATACTTCAACATATCAAAAGAAGGAGAATCTGAAGGCAACAAAGGAGATTCTAAAGACAAGTCGTTTTTAGAAGGTTATAAAAAGGTTCTCAATTCTAAAAGTAGTGATGACTCTCTGGCCAATTTTGCAAGATGGGAGCCAGGTCATGGCAAGTTTAAATTTCGTCATCCTTGGGACTTATACCTCAAAACTGGTGCCCTTTCTCGCCAATGTGCATATCGAATGGAAGCTCTAAATGCGCACCTCAATTCTGACATCCAAGGATCCCCAGAATTTCGTTGTACCATCCAAGAGCTATGCTCAGAAATGTGTTTGGAATCTAGCAAAGCTTTCAAGGAACTAGGATCATCAATCAGAACAATGACTAGGCCATCTTCTTCAGATACACACGTTGCAAACGCAAAAGCTACAGTTAAGAGCCTCAAGTCATTGCTCGAATCAAGTTCATGGAAAGAAGCAGACCTTTTATCACTTATACCAGTTGTGACAGTGGCTTCACTACTGATTGATATTGTTGAATTCACGGAGAAAATAGCAGATTCGGTGAATGATCTTGCCACCCTCACacattttgatattaaagaTACAGATAAATCTCCAAAACCATCACAGTCTCCACACTGTGAATGTGCTGAACCGGGTCCCAAGACTGATAGCCTCCAACTCGTTATTCTAGTTGAGGAGTCAGCGTTAGCTGTGTCAGATAGTGAAAAATCAAACGTTGTTTGA 1431 0.4151 MASPNTDQEKAGVLGRVLALPKVVKEKVLGICRLTKEIAQDDPRKVIHSLKVGLAISLVSLFYYYQPLYENFGLSAMWAVMTVVVVFEYTVGATLGKGLNRTIATLAAGALGVGAHYLASLSGTTGEPILIGAFVFVQAAIASFIRFFPKVKARYDYGMLIFILTFSLISVSGFRDDEVLEMAHKRLSTIFIGGSACVMISIFVCPVWAGEEFHYSIAHKLEILGDFLEAFVREYFNISKEGESEGNKGDSKDKSFLEGYKKVLNSKSSDDSLANFARWEPGHGKFKFRHPWDLYLKTGALSRQCAYRMEALNAHLNSDIQGSPEFRCTIQELCSEMCLESSKAFKELGSSIRTMTRPSSSDTHVANAKATVKSLKSLLESSSWKEADLLSLIPVVTVASLLIDIVEFTEKIADSVNDLATLTHFDIKDTDKSPKPSQSPHCECAEPGPKTDSLQLVILVEESALAVSDSEKSNVV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2301 476 Pfam Aluminium activated malate transporter 37 420 IPR020966 GO:0015743
Ssu3g2301 476 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 7 11 436 - -
Ssu3g2301 476 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 11 436 - -
Ssu3g2301 476 MobiDBLite consensus disorder prediction 429 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2301 Ssu-Chr3 73565293 73567686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2301 26 474 Miscellaneous Gene Families AT2G27240 54.545 7.12e-173 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2301 - - gmx:100816113 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2301 3 73565293 73567686 Ssu3g2301 3 73565293 73567686 ECH