Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2291 ATGGGAAAGAAGCAGAACGAGAGCCAGAGAACGGGGCTAGGTCGGGCCCTGGTGAAGCAGCACAACCAGATGATCCAACAGAGCAAGGACAAGTCTCGCTTCTACAAGAAGAAGGTTCTCGAATCTTTCACCGAAGTCTCCGACATCGACGCCATCATCGAGCAATCCCTCCCCGACCCCACCGCCGCCGCCTCCGCCTCCACCACCCTCATCAGCCTGGATCCAGGATCTGTGTCCGATGAAACAACGCCTGAAGAAACGAGGAGGCAGCAGAAGCGAGAGGAAGCGCTCCATGTCAGCAGCCTCCGAGTTCCGCGCCGGCCGCCGTGGACTTCCGACATGTCCGCCGAGGAGCTTCACGACAGCGAAACGCAAGCTTTCTTGATTTGGCGTCGCAGCTTGGCAAGGCTCGAGGAGAATAAGAAGCTTGTCCTTACTCCGTTTGAGAAGAATCTTGACATCTGGAGACAGCTCTGGCGGGTTGTTGAGCGTAGTGATCTGCTTGTTATGGTCGTTGATTCGCGAGATCCCCTGTTCTATCGTTGTCCAGACCTTGAGGCTTATGCACGAGAAGTTGATGAGCATAAACGCACATTGCTTTTGGTTAATAAGGCAGATCTTTTACCTGCTTCTATCAGAGAGAAATGGGTAGAATACTTTCATGCTCATGATATTCTCTTCATCTTCTGGTCGGCTAAAGCTGCTACTGCAGCCCTGGAAGGCAAAAAGCTTGGTCCATCATGTGAGGATGATAACATGGGGAGAACTAATAGCTCTGACACAAAGATATATGGAAGGGATGAGCTTTTGGCCCGCTTGCAATCAGAGGCAGAAGAGATAGTTGACTGGAGGAGAAATTCAGGCTCTTCTGACGCGGGACCATCTAACATTAAATCCCCTGCTGAAAATGTTGCTGGTAGTTCATCATTGAGTAACGTAGTTGTGGGATTTGTTGGATATCCTAATGTGGGGAAAAGTTCAACTATTAATGCTCTGGTTGGTCAAAAACTGACTGGTGTCACCTCTACTCCGGGGAAAACAAAGCACTTTCAGACATTAATAATGTCTGATAAATTGACCCTTTGTGATTGTCCTGGATTAGTTTTTCCATCTTTCTCAAGCTCAAGATATGAGATGATCGCTTGTGGGGTGTTACCTATTGATAGGATGACTGAACACAGGGAATCTGTCCAAATTGTAGCTGATAGAGTCCCGAGACATGTCATCGAGGAGATTTATAAGATAAGGCTTCCCAAACCTAAGCCATATGAGTCCCAATCCCGCCCTCCTCTAGCATCTGAACTTTTGAGAGCATATTGTGCTGCTCGTGGGTATGTGGCCTCTAGTGGACTCCCTGATGAAACCAGGGCTGCCCGTCAGATATTGAAAGATTACATTGATGGGAAGCTGCCTCACTATGAAATGCCTCCCGGAGCATCAGATGAGGAACAAGCTTTGGAAGATCCCACTGGAGATGACTCAGTTAACATGCATGCATCAGATTCATCTGGTATTGAAGATTCTTCAGATGTTGAGAGTGAACTTGCACCAAATCTTGAACATGTATTGGATGACCTCAATTCATTTGACATGGCTAATGGACTTGCTCCAAAAAATAGTACCGTTAAGAAGTCTAAGGCATCTCATAAGCACCATAAAAAGCCAGAGAGGAAAAAAGATCGTTCTTGGAGAGCAGGAAATGATGATGCTGATGGGATGCCAGTTGCAAGATTCTTTCAGAAACCAGTAAATACAGGTCCTCTGAAGGTTGGGTAA 1776 0.4724 MGKKQNESQRTGLGRALVKQHNQMIQQSKDKSRFYKKKVLESFTEVSDIDAIIEQSLPDPTAAASASTTLISLDPGSVSDETTPEETRRQQKREEALHVSSLRVPRRPPWTSDMSAEELHDSETQAFLIWRRSLARLEENKKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDSRDPLFYRCPDLEAYAREVDEHKRTLLLVNKADLLPASIREKWVEYFHAHDILFIFWSAKAATAALEGKKLGPSCEDDNMGRTNSSDTKIYGRDELLARLQSEAEEIVDWRRNSGSSDAGPSNIKSPAENVAGSSSLSNVVVGFVGYPNVGKSSTINALVGQKLTGVTSTPGKTKHFQTLIMSDKLTLCDCPGLVFPSFSSSRYEMIACGVLPIDRMTEHRESVQIVADRVPRHVIEEIYKIRLPKPKPYESQSRPPLASELLRAYCAARGYVASSGLPDETRAARQILKDYIDGKLPHYEMPPGASDEEQALEDPTGDDSVNMHASDSSGIEDSSDVESELAPNLEHVLDDLNSFDMANGLAPKNSTVKKSKASHKHHKKPERKKDRSWRAGNDDADGMPVARFFQKPVNTGPLKVG 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2291 591 Coils Coil 266 286 - -
Ssu3g2291 591 MobiDBLite consensus disorder prediction 64 80 - -
Ssu3g2291 591 Pfam 50S ribosome-binding GTPase 315 371 IPR006073 GO:0005525
Ssu3g2291 591 Gene3D - 374 476 IPR023179 -
Ssu3g2291 591 MobiDBLite consensus disorder prediction 284 304 - -
Ssu3g2291 591 PRINTS GTP1/OBG GTP-binding protein family signature 315 335 IPR006073 GO:0005525
Ssu3g2291 591 PRINTS GTP1/OBG GTP-binding protein family signature 361 376 IPR006073 GO:0005525
Ssu3g2291 591 MobiDBLite consensus disorder prediction 472 514 - -
Ssu3g2291 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 445 IPR027417 -
Ssu3g2291 591 MobiDBLite consensus disorder prediction 64 98 - -
Ssu3g2291 591 CDD HSR1_MMR1 154 370 - -
Ssu3g2291 591 MobiDBLite consensus disorder prediction 81 98 - -
Ssu3g2291 591 MobiDBLite consensus disorder prediction 530 591 - -
Ssu3g2291 591 PANTHER LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED 8 559 IPR043358 GO:0003924
Ssu3g2291 591 MobiDBLite consensus disorder prediction 1 31 - -
Ssu3g2291 591 PANTHER GTPASE LSG1-1 8 559 - -
Ssu3g2291 591 Gene3D - 154 371 IPR027417 -
Ssu3g2291 591 MobiDBLite consensus disorder prediction 543 559 - -
Ssu3g2291 591 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 155 370 IPR030378 GO:0005525
Ssu3g2291 591 MobiDBLite consensus disorder prediction 1 29 - -
Ssu3g2291 591 MobiDBLite consensus disorder prediction 288 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2291 Ssu-Chr3 73172392 73176894 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2291 K14539 - gmx:100817523 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2291 3 73172392 73176894 Ssu3g2291 3 73172392 73176894 ECH