Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2285 ATGACTCTGGCTCGAGGCCTCGCCGTTGTGTTCCTCCTGTTTGCTTTGTACTGTGGGCTGGACCCATTCCAGCACAGCCCAATAGCCCACTTCCCCGACTTCGAGCCCAAGAGGGTCGACATGCCCGCATGGTCCGAGATTCCGACGGACCAAGACAAGCACAATTTGTTGCAAAAATCTGAGATTAAGTTTCTGAATCAGGTTCAGGGACCAGAGAGCATTGCCTTCGACCCTCTTGGTCGTGGCCCTTACACTGGTCTCGCTGATGGAAGAATTGTCTTCTGGAACGGTCACTCTTGGGTTGACTTCGCTTATACCTCCCCCAACAGGTCGGAAATATGTAATCCTATACCATCTGCTACACCATTTAGTTATGTGAAGACTGAGCATATATGTGGACGGCCTTTGGGACTCAGATTTGACAAGAAAACAGGTGATTTGTACATTTCAGATGCATATTTTGGGCTCTTGAAGGTGGGACCCAAGGGTGGTTTAGCAACATCTCTTGTAACTGAGGTTGAGGGGGTGCCACTGAGATTTGCTAATGATGTTGACGTTGATGCGGAAGGGAATGTTTATTTTACAGAGAGCAGTTCTCATTATCCGAGGAGGAATTTCATTCAGCTGGTATTTTCTGGGGATGATAGTGGCAAGGTTTTAAAATACAACCTTGCCACTAAGGAAACCACTGTTCTCATGAGGAACATTCAATTCCCAAATGGCATTTCCTTAAGCAAGGATGGTTCCTTCTTTGTCTTTTGTGAAGGGGTTGTTGGCAGGTTACGTAAATACTGGCTGAAAGGAGATAAAGCTGGGACTTCAGAGATTTTAGCCATCCTACCAGGATTTCCTGACAATGTGAGAGTCAATGAAGATGGTGATTTTTGGGTAGCTCTTCATTGTAGAAGGTATATGTTTGCATACTATAATGGTCTCTACCCAAAGATGAGGAAAATCATACTCAAGCTTCCTATACCAACAAAGATTCAATACCTGCTTCAAATAGGAGGTCGCTTACATGCAGTAGCTATTAAGTATAGTCCTGAAGGTAAACTTGTGCAGATATTGGAGGACAGTGAGGGGAAGGTTGTTAAAGCAGTGAGTGAAGTGGAGGAGAAGGATGGTAAACTCTGGATGGGAAGTGTTCTCATGCCTTTTGTTGCTGTATACAACTTGAAATGA 1182 0.4475 MTLARGLAVVFLLFALYCGLDPFQHSPIAHFPDFEPKRVDMPAWSEIPTDQDKHNLLQKSEIKFLNQVQGPESIAFDPLGRGPYTGLADGRIVFWNGHSWVDFAYTSPNRSEICNPIPSATPFSYVKTEHICGRPLGLRFDKKTGDLYISDAYFGLLKVGPKGGLATSLVTEVEGVPLRFANDVDVDAEGNVYFTESSSHYPRRNFIQLVFSGDDSGKVLKYNLATKETTVLMRNIQFPNGISLSKDGSFFVFCEGVVGRLRKYWLKGDKAGTSEILAILPGFPDNVRVNEDGDFWVALHCRRYMFAYYNGLYPKMRKIILKLPIPTKIQYLLQIGGRLHAVAIKYSPEGKLVQILEDSEGKVVKAVSEVEEKDGKLWMGSVLMPFVAVYNLK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2285 393 PANTHER STRICTOSIDINE SYNTHASE TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 7 392 - -
Ssu3g2285 393 Pfam Strictosidine synthase-like, N-terminal 58 94 - -
Ssu3g2285 393 Pfam Strictosidine synthase 182 268 IPR018119 GO:0009058|GO:0016844
Ssu3g2285 393 Gene3D - 54 393 IPR011042 -
Ssu3g2285 393 SUPERFAMILY Calcium-dependent phosphotriesterase 45 392 - -
Ssu3g2285 393 PANTHER STRICTOSIDINE SYNTHASE-RELATED 7 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2285 Ssu-Chr3 73059348 73064224 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2285 - - gmx:100803331 722.235