Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2262 ATGGGTTGCTTTATTAGAGTGTGTTGTGCGTTATTGTTGGTAGTGTTGTTGGTGGCATGTGCTAGTGGGGAGGACCCTTATAGGTTCTACACTTGGAATATCACATATGGAGACATTTATCCACTTGGTGTTAAACAACAgGGGATATTGATAAACTGGCAATTCCCAGGGCCGCAAATTGAGGCCGTGACCAATGATAACTTGATTATCAATGTTTACAACAGCTTGGATGAACCTTTCCTCATCTCTTGGAACGGAGTGCTGCAGAGGAGAAACTCATGGCAGGATGGAGTGTATGGTACCAATTGTCCAATTCCACCAGGGCAGAACTTCACTTATGTTCTTCAAGTGAAGGATCAGATAGGTAGCTACTTCTACTACCCTTCCCTTGCATTCCACAAGGCAGCAGGAGGTTATGGTGGATTCAAAATTGCGAGCCGCCCCGGGATTCCGGTACCTTTTCCTACTCCAGCAGGAGATTTCACCGTATTGGCAGGAGACTGGTACAAGAGAAATCACACAGATTTGAGGGCAATTTTAGATGGTGGAAGTGACCTTCCTTTCCCTGATGGGCTTATCATCAATGGTCGTGGTTCCAATGCCTACACATTCACAGTTGATCAAGGCAAGACATACAGATTCCGCATATCAAATGTGGGGCTCACCACTTCCATCAACTTCAGAATCCAAGGGCATAAAATGACAATTGTTGAGGTGGAAGGGACCCACACTCTCCAAAACATTTATGACTCCCTTGACGTTCATCTGGGGCAGACTTACTCCGTGTTGGTTACTGCTGATCAACCACCCCAAGACTACCTCATTGTTGTCACAACACGGTTCACCTCCCAAGTGTTGAATGCTACCTCCATTCTTCGTTACAGTAACTCTGCAAGAAGTGTTTCTGGCCTTTTCCCTTGGGGGCCAAGTATTGAAATTGATTGGTCTTTAAACCAAGCTCGCTCTAttaggAGGAATCTGACAGCAAGTGGGCCAAGACCTAATCCACAAGGATCTTACCATTATGGTATGATAAACACAACCCGCACAATTATACTTCAAAATTCTGCTCCTACTATCAATGGCAAGCAGAGATATGCTGTCAATAGTGTGTCCTTCATACCTGCTGATACACCACTTAAACTGGCTGATTACTACAAGATCCAAGGAGTGTTCTCCCTTGGAAGTATCCCTGACTATcccagtggtggtggtggttacCTTCAAACTTCTGTCATGGAAGCTGATTTCCGAGGCTACGTGGAGGTTGTGTTTCAGAATCCTGAAGACACTCTGCAGTCATGGCACATTGATGGCCACAGCTTCTTTGTAGTAGGAATGGATGGAGGACAATGGTCAGCAGCAAGCAGGCTACGTTACAATTTAAGAGATACAATTTCTCGTTGCACAGTTCAGGTGTATCCCAAGTCATGGACTGCACTTTACGTGCCTTTGGACAATGTGGGAATGTGGAATGTGAGGTCCGAGAATTGGGCTCGTCAGTATTTGGGCCAGCAATTTTATCTTAGAGTGTATTCCCCTGCAAATTCATGGAGAGATGAGTATCCAATTCCAAGTAATGCTCCGCGGTGCGGCAAGGCTGTGGGCCACTACAATCGGGCTTTATAA 1629 0.4469 MGCFIRVCCALLLVVLLVACASGEDPYRFYTWNITYGDIYPLGVKQQGILINWQFPGPQIEAVTNDNLIINVYNSLDEPFLISWNGVLQRRNSWQDGVYGTNCPIPPGQNFTYVLQVKDQIGSYFYYPSLAFHKAAGGYGGFKIASRPGIPVPFPTPAGDFTVLAGDWYKRNHTDLRAILDGGSDLPFPDGLIINGRGSNAYTFTVDQGKTYRFRISNVGLTTSINFRIQGHKMTIVEVEGTHTLQNIYDSLDVHLGQTYSVLVTADQPPQDYLIVVTTRFTSQVLNATSILRYSNSARSVSGLFPWGPSIEIDWSLNQARSIRRNLTASGPRPNPQGSYHYGMINTTRTIILQNSAPTINGKQRYAVNSVSFIPADTPLKLADYYKIQGVFSLGSIPDYPSGGGGYLQTSVMEADFRGYVEVVFQNPEDTLQSWHIDGHSFFVVGMDGGQWSAASRLRYNLRDTISRCTVQVYPKSWTALYVPLDNVGMWNVRSENWARQYLGQQFYLRVYSPANSWRDEYPIPSNAPRCGKAVGHYNRAL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2262 542 PANTHER L-ASCORBATE OXIDASE HOMOLOG 9 535 - -
Ssu3g2262 542 SUPERFAMILY Cupredoxins 154 334 IPR008972 -
Ssu3g2262 542 CDD CuRO_1_AAO_like_1 29 145 IPR034273 GO:0005507
Ssu3g2262 542 CDD CuRO_3_AAO_like_1 375 497 IPR034275 GO:0005507
Ssu3g2262 542 Pfam Multicopper oxidase 378 513 IPR011706 GO:0005507|GO:0016491
Ssu3g2262 542 SUPERFAMILY Cupredoxins 24 174 IPR008972 -
Ssu3g2262 542 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Ssu3g2262 542 Pfam Multicopper oxidase 160 296 IPR001117 -
Ssu3g2262 542 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507
Ssu3g2262 542 PANTHER MULTI-COPPER OXIDASE 9 535 IPR045087 -
Ssu3g2262 542 Gene3D - 158 331 IPR008972 -
Ssu3g2262 542 Gene3D - 343 538 IPR008972 -
Ssu3g2262 542 Gene3D - 27 148 IPR008972 -
Ssu3g2262 542 SUPERFAMILY Cupredoxins 344 538 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2262 Ssu-Chr3 72693765 72697944 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2262 - - gmx:100797670 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2262 3 72693765 72697944 Ssu3g2262 3 72693765 72697944 ECH