Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2259 ATGGTCGTAAACCTCTCTCCCCCTCCACCTTCACATTCCTGTTCCATCATTAGATTGGCCAATTCAAAGACACCCATTTCAGAACCATGGTTCAGGCTCAAAACCCACTTCCCAAAACCaattttttccccctcttttgCCTCCCCCAGCGTGACCTTCACTTGCAAGAAGCAGTTTTGGCATGGAAACAGCAGGAACAGGTTGGATTTTAGGACTTGGTCTATTGGTGGATTTGATTATGGGAACTTTGAGGGGCCTCAGTCTGTGCTTGAGGCTGCTGCAGTGTTGACAGCCATCATTGTTGTGCATGAGAGTGGCCACTTCCTTGCTGCTTCTCTCCAAGGCATCCATGTGAGTAAGTTTGCTGTAGGGTTTGGTCCAATTTTAGCAAAGTTCAATGCAAAAAATGTGGAATATTCCATCAGGGCTTTTCCCCTTGGTGGCTTCGTGGGGTTCCCTGATAATGATCCAGAGAGTGACATTCCTGTTGATGATGAGAATTTGCTTAAGAATAGGCCAATATTGGATAGGTTGATTGTGGTTTCTGCTGGTGTTGTTGCTAacataatttttgcatttgttaTTATCTTTGCTCAAGTCCTGTCTGTTGGTTTGCCTGAGCAAGAGGTCTTTCCTGGGGTGATTGTGCCTGAAGTTAGACCCTTTTCAGCTGCTTCCAGAGATGGGTTGCTAGCTGGGGATGTGATCCTTGAGGTCAATGGAAGTGAGTTTAATAAACCGGGTCCTAATGCTGTTCATGAAGTTGTTGATGTCATCAAGAGGAACCCCAAGAGATATGTTTTGCTCAAGATTAAAAGGGGGGAGCAGAACTTTGAAATAGCGGTCACCCCAGATGAGAATTTTGATGGAACTGGGAAAATTGGAGTTCAGCTAGCCCCTAATGTGAAGATAGCTAAGGTTAGGCCAAAAAATTTGGTAGAGGCTGTGGAGTTTACTGGGAAAGAGTTTTGGGGTCTAGCATCTAATGTTTTAGATGGCTTAAAGCAGACTTTTTTGAATTTCTCCCAGTCAGCTAGTAAGGTTTCAGGTCCTGTAGCCATTATTGCTGTTGGTGCAGAAGTAGCGCGGTCGAATGTTGATGGTCTCTTCCAATTTGCCGCGATACTCAATATTAACCTTGCGGTTATAAACCTTCTTCCTTTGCCTGCTTTAGATGGAGGTACATTGGCATTGATCCTCATTGAGGCTGCCAGGGGTGGGAGAAAGCTACCTTTGGAAGTGGAGCAAACGATCATGTCTTCTGGAATTATGCTTGTTATAATTCTGGGGTTATTCCTTATTGTTCGCGATACCCTAAACCTTGATATTATCAAAGACATGTTGTAA 1347 0.4328 MVVNLSPPPPSHSCSIIRLANSKTPISEPWFRLKTHFPKPIFSPSFASPSVTFTCKKQFWHGNSRNRLDFRTWSIGGFDYGNFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRLIVVSAGVVANIIFAFVIIFAQVLSVGLPEQEVFPGVIVPEVRPFSAASRDGLLAGDVILEVNGSEFNKPGPNAVHEVVDVIKRNPKRYVLLKIKRGEQNFEIAVTPDENFDGTGKIGVQLAPNVKIAKVRPKNLVEAVEFTGKEFWGLASNVLDGLKQTFLNFSQSASKVSGPVAIIAVGAEVARSNVDGLFQFAAILNINLAVINLLPLPALDGGTLALILIEAARGGRKLPLEVEQTIMSSGIMLVIILGLFLIVRDTLNLDIIKDML 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2259 448 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 28 448 IPR004387 GO:0004222|GO:0006508|GO:0016021
Ssu3g2259 448 ProSiteProfiles PDZ domain profile. 213 275 IPR001478 GO:0005515
Ssu3g2259 448 TIGRFAM TIGR00054: RIP metalloprotease RseP 217 441 IPR004387 GO:0004222|GO:0006508|GO:0016021
Ssu3g2259 448 CDD S2P-M50_PDZ_RseP-like 89 440 - -
Ssu3g2259 448 Pfam PDZ domain 216 273 IPR041489 -
Ssu3g2259 448 CDD PDZ_metalloprotease 201 284 - -
Ssu3g2259 448 Pfam Peptidase family M50 93 429 IPR008915 GO:0004222|GO:0006508
Ssu3g2259 448 SMART pdz_new 201 275 IPR001478 GO:0005515
Ssu3g2259 448 Gene3D - 205 299 IPR036034 GO:0005515
Ssu3g2259 448 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 28 448 - -
Ssu3g2259 448 SUPERFAMILY PDZ domain-like 208 286 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2259 - - gmx:100800101 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2259 3 72608438 72609784 Ssu3g2259 3 72608438 72609784 ECH