Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2254 ATGCGCGTGGCATTCACCGTCGCCACATTCGCTGCCGCAGCTGCTATCATCTCCGTCTTCTTCGCCGCGCGAAGGCGCAAGCACCACAAGTCCCCGTCGAGTCCGTGCCATCTACATTCCGAACAGAAACCACAGAGCGCGTTCAAGCGCGTCGTAGCGGATAATTCCTACGCTCCGTTCAGGCACCTCAGCAACGACGAGAATGCTTCGAATTCGCATCCGTTTGAGGTGGAGATTACGGCATTGTTGAAAAATCCTCAGCCTGAAATTGAGCTTGGAACTGAGATTGTGGACTTGGAAATGAAGGATTCGTATGTTTGGGTTCGTACCGAGATGCAGTTAAAGGAACTGGTTGATGTGTTGAGGGAAGAGAGGTTCTTTGCTGTGGACACGGAGCAACATAGCTTGCGATCTTTTCTAGGCTTTACAGCATTAGTTCAGATTTCTACACGGGAGAAGATTATTTGGTTGACACTATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCAGTTTTTGCCAATCCTTCAATTTGTAAAGTATGTGTTCCATGGGGCTGACAATGATATACTCTGGCTACAGAGGGACTTCCACATATACGTTGTTAATctatttgatacttcaaagGCGTGTGAGGTGCTGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGacaacaaataaatcattacAGCGTGGAGACTGGAGACAGCGCCCTCTATCAGCAGAAATGGTACATTATGCACGAACAGATGCACACTACCTGCTGTATATTGCAAACTGTCTGATCAATGAACTCAAACAACTGTACAATGAAAACTCTTGTACCGAAGACAAATTCCATTTTGTTCTCGAGGCTAGTCGGCGTTCAAACATGATTtgtttacaacttttcacaaaaGAGATTGAAGCTTCTCCTGGAGGATCTTCTgcattatcattattttcacGTCAAGTGAGCAGTCATGACTTTCCGTCAATTTCAAACGAAACCCAGATTCAGAATATTGTGAGGCAACTGTGCGCATGGAGAGATCTGATGGCTCGTATTCATGATGAGAACTTAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGTCTTCAGCAAGTCCCTCCGAAATATACAACACCATAGCTCAGACTGATATCAATATGAAAACCGGTGTCAGCTCTTTCATCCCTTCCCCATCTCCTGTTGTTTGCAGCCACCTGAGTGATATCTGTCATTTGCTTGCAAACAAGTTGgttaatgatgatgatatttATTCAGTGATTCTTCAGAAGTGTCTAGGTCAAAATGGGAGTTGTccactttctatttttaattatgctttGTTGGTAAACAGTAACCTAAGACCTACTTTGGTCCATAAACAACCGGGCCCAAAAAATCCTAAACAGTACTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAATTCTCTTGTAAATCTCCTGTTTATCACAATTGCCGGATATTTGCTAATGATGGGAGACTGCTTTGTTATTGTGATCAGAGGAAGCTTGAATGGTACCTTAGTCGGGATCTTGCAAAACTTATTGATGAGGAACCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGCCGGCCTGAGGATGAAgacaatgatttttatatccagagtaagaaaaatatatgtgttGGGTGTGGTGAAGGAAATCACTACTTACGGTATCGAATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGACATTGTCCTACTTTGTGTGGATTGCCATGAAGTTGCACATGCTGCTGCAGAAAagtataagagaaaaatagCTGTTGAATTTGGGATTCCTCTCTACCTTCGGAGGGTAGTTCATCCAGGTCAAGAGACCGAAAAACAGATTGAAGAGAGAGGTGTATCTCCATTACAGTTACGAACAGCTGCTATGGCTCTTCTACGCCATGGACCAAGAATGCCTCTCAATCGCCGTGAAGAACTGACTGAGATTATAAAGAGATATTATGGAGGAAGGGAGATATCTGACGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACTCCTCATGAGAGAAGACGATTTGAGAAGAAGAGAGGGTTTTCTTTTAGATATTCTATGGGAAGTACTGCTACAGTGCCCGAACAGGATAATCATGCTGGTTGCACATCCAGAATGAGTAATGTGGACACCTTGAAAGTTGATGCTCATGATGGCTCATATGCAAATGAAGAAACAAGTGAAGTAGATAGCAAACTTTTGATGAGAAAAGATGATTTTGGAAACTCCACTTTAGCTTCTGTTATTGCAGTTAATGGAGCTGTCTCTGCATCTTTGAACACAAATACGATCACAGCTGAAACTACAGATTACAATGAAAGCAGTGACTCTGCTGTAAATGTTGATAATGGTCGTCTGAGCAGAAGGCAAGCCAATGGACTGAGTGACTTGTCCTGTTCCCCCAGTGATGAAAAATCGACACGTGCTGAACACAATTCAAAACTATCACTCTTGGGACATGGACCACATGGGAAAAAAGTTGTAGAACTTTTACTGAAGGAGTACGGTGAAGATGGCATTCGAGAATTTTGTCAAAGATGGAGACAAGTATTTGTGGACGCTGTAAAGCCACGTTTTCTTCCTGCTGGTTGGGATGTAAAACACAGTGGAAGAAGGGACTTCGGCGAGTTCAGTGTATACAATCCTGACAAGAGAGTAGCTGCTGCTAGTAGAGAGTAA 2790 0.4104 MRVAFTVATFAAAAAIISVFFAARRRKHHKSPSSPCHLHSEQKPQSAFKRVVADNSYAPFRHLSNDENASNSHPFEVEITALLKNPQPEIELGTEIVDLEMKDSYVWVRTEMQLKELVDVLREERFFAVDTEQHSLRSFLGFTALVQISTREKIIWLTLLPCMILWAFFAQFLPILQFVKYVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKSLQRGDWRQRPLSAEMVHYARTDAHYLLYIANCLINELKQLYNENSCTEDKFHFVLEASRRSNMICLQLFTKEIEASPGGSSALSLFSRQVSSHDFPSISNETQIQNIVRQLCAWRDLMARIHDENLKYVLSDQAIVALASQSSASPSEIYNTIAQTDINMKTGVSSFIPSPSPVVCSHLSDICHLLANKLVNDDDIYSVILQKCLGQNGSCPLSIFNYALLVNSNLRPTLVHKQPGPKNPKQYSRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDQRKLEWYLSRDLAKLIDEEPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAVEFGIPLYLRRVVHPGQETEKQIEERGVSPLQLRTAAMALLRHGPRMPLNRREELTEIIKRYYGGREISDEDLERALQVGMTPHERRRFEKKRGFSFRYSMGSTATVPEQDNHAGCTSRMSNVDTLKVDAHDGSYANEETSEVDSKLLMRKDDFGNSTLASVIAVNGAVSASLNTNTITAETTDYNESSDSAVNVDNGRLSRRQANGLSDLSCSPSDEKSTRAEHNSKLSLLGHGPHGKKVVELLLKEYGEDGIREFCQRWRQVFVDAVKPRFLPAGWDVKHSGRRDFGEFSVYNPDKRVAAASRE 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2254 929 Coils Coil 266 286 - -
Ssu3g2254 929 SUPERFAMILY Ribonuclease H-like 43 276 IPR012337 -
Ssu3g2254 929 Pfam 3'-5' exonuclease 105 273 IPR002562 GO:0003676|GO:0006139|GO:0008408
Ssu3g2254 929 Pfam HRDC domain 342 385 IPR002121 GO:0003676
Ssu3g2254 929 SMART 35exoneu6 105 274 IPR002562 GO:0003676|GO:0006139|GO:0008408
Ssu3g2254 929 Gene3D HRDC domain 329 431 IPR044876 -
Ssu3g2254 929 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 2 923 IPR045092 GO:0000175|GO:0000467
Ssu3g2254 929 Gene3D - 41 311 IPR036397 GO:0003676
Ssu3g2254 929 PANTHER PROTEIN RRP6-LIKE 3 2 923 - -
Ssu3g2254 929 SUPERFAMILY HRDC-like 341 392 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2254 Ssu-Chr3 72475993 72483286 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2254 K12951 - gmx:100791485 1535.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2254 3 72475993 72483286 Ssu3g2254 3 72475993 72483286 ECH