Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2253 ATGGCAGAACCCAAGGTTAAATACGATCGCCAACTCAGAATATGGGGTGAACAAGGACAGGCAGCCCTTGAGAAATCTAGTATTTGCTTACTTAATTGTGGTCCTACTGGTTCTGAAACACTTAAGAATCTTGTTCTTGGTGGGGTTGGAAGCATCACTGTAGTTGATGGATCTAAAGTTGAAGTGGGTGACCTTGGAAACAATTTTTTGGTGGATGACTCCAGCCTTGGGAAGTCAAAGGCAAAATGTGTATGCTCATTTCTTCAAGAGCTGAATGATGCAGTTAAAGCAAAATTTGTAGAAGAGTCTCCCGCAACATTGATTGAGACAAATCCATCATTCTTTTCTCAGTTTACTTTGGTTGTTGCCACTCAGCTCGTAGAAAATTCAATGATAAAGCTTGACCGAATCTGCAGGGAGGCAAATGTTATGTTGATCTTTGCTCGCTCCTATGGCCTTACAGGGTTTGTTCGAATTAGTTTGAAGGAACATGCTGTGATTGAGTCAAAGCCTGAACATTTTTTGGATGATCTCCGGTTAAATAATCCTTGGCCTGAACTCAAGAGATTTGCAGACGACATTGACTTGAATGTGCAAGATCCTGTGGCCCATAAACACATACCATATGTTGTCATTCTTGTCAAGATGGCTGATGAGTGGGCCAAAAGCCATGGTGGTAGGCTTCCATCAAccagagaagaaaaaaaggagttcaagGAGCTTCTTAAGGCTGGGATGGTTGCACAAGATGAAGATAATTATAAAGAAGCTATTGATTCATCATTCAAAGTATTTGCTCCCCGAGGAATAAGTTTGGAGTTGCAACAGATACTAAATGATAGTTCTGCTGAAGTGGACTCTAATTCATCAGATTTTTGGGTGTTAGTGGCAGCTCTGAAGGATTTCATTACAAATGAAGGTGGTGGGGAGGTACCTCTTGAAGGATCTATACCAGATATGACTTCTTCTACTGAGCAATATGTGAATTTGCAGAATATCTATCACGCTAAAGCTGAGGCTGACTTTCTTGTAATAGAACGTCTAGTGAGAAGTACTTTAAAGAAGATTGGTAGAGATTCAAATAGCATTCCAAGGTCAACAATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAAGTTTGCAGGTACCGTCTAATTGAAGATGAATTTAATTCTCCAAACCTACCCGAGTTACAGAAGTACCTAACCAATGAGGATTACAGCATTGCTGTGGGAATTTATATTTTGCTTCGTGCTGTTGACCGGTTTGCTTTTAATTACAACAGTTTTCCAGGACAGTTTGACAGTGCAATGGATGAGGATATACCTCGATTAAAGAGCACAGCAATTGGCCTACTTAGTGACTTGGGATGCAATGGTGCCACTTTGGCCGAGGACCTTATCAATGAGATGTGTCGATTTGGTGCTGCCGAGCTTCATGCTGTTGCTGCTTTGGTTGGAGGAATTGCATCGCAAGAAGTGATCAAGCTCACAACAAGGCAATTTGTACCAATGTCTGGAGCCTACATTTTCAACGGCATTGACCACAAGTCACAGCTGTTGTCACTGTAA 1572 0.4046 MAEPKVKYDRQLRIWGEQGQAALEKSSICLLNCGPTGSETLKNLVLGGVGSITVVDGSKVEVGDLGNNFLVDDSSLGKSKAKCVCSFLQELNDAVKAKFVEESPATLIETNPSFFSQFTLVVATQLVENSMIKLDRICREANVMLIFARSYGLTGFVRISLKEHAVIESKPEHFLDDLRLNNPWPELKRFADDIDLNVQDPVAHKHIPYVVILVKMADEWAKSHGGRLPSTREEKKEFKELLKAGMVAQDEDNYKEAIDSSFKVFAPRGISLELQQILNDSSAEVDSNSSDFWVLVAALKDFITNEGGGEVPLEGSIPDMTSSTEQYVNLQNIYHAKAEADFLVIERLVRSTLKKIGRDSNSIPRSTIKSFCKNARKLKVCRYRLIEDEFNSPNLPELQKYLTNEDYSIAVGIYILLRAVDRFAFNYNSFPGQFDSAMDEDIPRLKSTAIGLLSDLGCNGATLAEDLINEMCRFGAAELHAVAALVGGIASQEVIKLTTRQFVPMSGAYIFNGIDHKSQLLSL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2253 523 Gene3D - 365 521 - -
Ssu3g2253 523 Pfam ThiF family 8 501 IPR000594 -
Ssu3g2253 523 PANTHER NEDD8-ACTIVATING ENZYME E1 REGULATORY SUBUNIT AXR1 2 523 - -
Ssu3g2253 523 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 7 519 IPR035985 GO:0008641
Ssu3g2253 523 Gene3D - 2 361 - -
Ssu3g2253 523 CDD APPBP1_RUB 7 521 - -
Ssu3g2253 523 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 2 523 IPR045886 -
Ssu3g2253 523 PIRSF APP-BP1 1 523 IPR030667 GO:0019781|GO:0045116
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2253 Ssu-Chr3 72468387 72475101 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2253 8 157 EF-hand Containing Proteins AT2G30110 30.263 3.16e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2253 K04532 - gmx:100793799 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2253 3 72468387 72475101 Ssu3g2253 3 72468387 72475101 ECH