Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2250 ATGTCTTGGCTCCTCCGATCTACCAAGACTAAGCTCCTCTactcctcttcctctttttcttcttctctttctagaaCCTTTCCCTCCCTCCCTCGCCCCACCCATGACCTCCCTCAGATCGGAGCCCTCTCTCCCCTCCCCGATGTCTTCCACCGCAACACCGCCACCATGCCTATCAGAGCGAAGGAAAATGCTTCCGGTGGAAACTTGACCGGTCTTCCCAGAGATCCTGCGAATGAGCTTGGCAGTGATTCTAATGCGATCAATTCTTCGAGGTACAAAGCTTTTGGACTGGACACCAGTGTGCTGGCTGGAGCTAGATATGGGACTAGAGTTTGGGCTGCACAGAGTCCAATGCTATTGGGTGTCAATACTGTGATGGCTAGAAGTTTTGAGAGAGGTATGGAAGCTGACACATTGGGAATGATTGGTTATAAACGTTTTATGAGTGATATCCCAAGTAAAACCAGTGAGACAAACCCATCTGGTTTTCGTCCGTTATCTCCTCATCTTCCTCTTTATCAGCCCCAACTTTCTTCGACACTCTCAATTGTCAATAGAATTGCTGGAGCTTTCCTAGCCACtgtcattttacttttttatatgatatatatgaaaatgggtttggttAGCCTCACCTATGACTCTTTCTACCAGTTCATATTTTATTCATCAAAACTCAACCTTCTTGCCATCGAGATTTCTGCCTTAGCTGTGTCCTATCATCTGTATAGTGCAATTCGTCATTTGTTCCTGTGA 759 0.4242 MSWLLRSTKTKLLYSSSSFSSSLSRTFPSLPRPTHDLPQIGALSPLPDVFHRNTATMPIRAKENASGGNLTGLPRDPANELGSDSNAINSSRYKAFGLDTSVLAGARYGTRVWAAQSPMLLGVNTVMARSFERGMEADTLGMIGYKRFMSDIPSKTSETNPSGFRPLSPHLPLYQPQLSSTLSIVNRIAGAFLATVILLFYMIYMKMGLVSLTYDSFYQFIFYSSKLNLLAIEISALAVSYHLYSAIRHLFL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2250 252 SUPERFAMILY LeuD/IlvD-like 91 133 - -
Ssu3g2250 252 SUPERFAMILY Fumarate reductase respiratory complex transmembrane subunits 158 251 IPR034804 GO:0016020
Ssu3g2250 252 PANTHER SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT 118 251 IPR014314 GO:0000104|GO:0006099|GO:0009055|GO:0045281
Ssu3g2250 252 Pfam Succinate dehydrogenase/Fumarate reductase transmembrane subunit 165 252 IPR000701 GO:0016627
Ssu3g2250 252 PANTHER SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIAL 118 251 - -
Ssu3g2250 252 Pfam Aconitase C-terminal domain 85 133 IPR000573 -
Ssu3g2250 252 Gene3D Fumarate reductase/succinate dehydrogenase, transmembrane subunit 150 252 IPR034804 GO:0016020
Ssu3g2250 252 Gene3D Aconitase, domain 4 40 142 IPR015928 -
Ssu3g2250 252 CDD SQR_TypeC_SdhC 165 252 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2250 K00236 K03885 gmx:100527396 400.208