Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2248 ATGAAGGGCTTGCTCTCTCCCAGTTTCCTTCTTCAGattactctctttcttcttgttcttcttctgTTTATGAACAAGTCCCAGGGCTCTCCAATCAGGGGTGCAGAATATTCGTTTTCTATCACTACCAAGGTTGATGTGCTGCCTCCTGATATCCCTCCAAGTACACAGCCACAGCCCTTTATTCCTCTTATAGCTCCTTCCCCATTGAGACCTTTCACAAATAATTCTGTGCCTAAGTTATCAGGCCACTGTTCATTGAATTTCTCAGCTGCTCAAGATATAATGACCACAACTGCTACTGATTGCTGGACTTCCTTTGCTCCTTATTTGGCAAATGTTGTATGTTGTCCTCAGTTTGATGCCATGCTGGTGACCCTCATAGGGCAGTCTAGCAAATACTCTGGGGTGCTAGCTTTGAACACAACTCATGCTAGTCACTGCCTCTCTGATGTTCAGAAGGTCCTTGTCAGTCAAGGAGCAAATGGGGacctaaaaaatatatgctCAATCCATCCAACAAATCTCACTGAGGCCTCTTGTCCTGTTGTATTTGTTGATGAATTTGAGAGTATTGTAGACACTTCAAGACTTCTGACTGCTTGTAGAAAAATTGATCCTGTAAATGAGTGTTGTGATCAAGTTTGCCAAACTGCCATACATTATGCTGCTAGAAAAATTGCCTTGAATGATTTGTCTAATTCAGATGGAAACCATAGCTTGCCTGGACCGACAGCTAGGATCAATGATTGTAAGAATATTGTCCTTCATTGGCTGGCCAGTAAACTTGATCCATCCACTGCAAATAGTGTTTTTAGAGGACTCTCAAACTGCAACCTAAACAAAGTATGCCCATTGGTTTTTCCAAATGTCACAAGTGTTGTGAATGAATGTGGAAATCTCTTAAATAACCAAACAGCTTGCTGCAAAGCCGTCAAAAGTTACGTGTCCTATTTGCAAGAACAGAGCTTTGTAACCAATCTGCAAGCCTTGAAATGTGCTGCATCACTTGGAAAGAAATTGCAGAAAGCAAATGTCTCCAAAAATGTTTATAATCTTTGTCATATAAGCCTGAAAGACTTTTCTCTTCAAGAATCTGGCTGCCTTTTGCCGAGTTTGCCTTCAGATGCAGTATTTGATGGAACTTCAGGGATTGGATTCATTTGTGACCTTAATGACAACATTGTAGCTCCATGGCCCACAACATCATATCCGTTTCCATCCTCATGCAATAGATCTACAAAACTTCCATCTCTTCCTACAGCAACATCTTCACAAAATGGTCTTTTCATTAATACCTTGGTTTTGCCTCTCCTCTTTACCTCTATACTACTTCCCAAGAGGCTTCTTTAG 1353 0.3999 MKGLLSPSFLLQITLFLLVLLLFMNKSQGSPIRGAEYSFSITTKVDVLPPDIPPSTQPQPFIPLIAPSPLRPFTNNSVPKLSGHCSLNFSAAQDIMTTTATDCWTSFAPYLANVVCCPQFDAMLVTLIGQSSKYSGVLALNTTHASHCLSDVQKVLVSQGANGDLKNICSIHPTNLTEASCPVVFVDEFESIVDTSRLLTACRKIDPVNECCDQVCQTAIHYAARKIALNDLSNSDGNHSLPGPTARINDCKNIVLHWLASKLDPSTANSVFRGLSNCNLNKVCPLVFPNVTSVVNECGNLLNNQTACCKAVKSYVSYLQEQSFVTNLQALKCAASLGKKLQKANVSKNVYNLCHISLKDFSLQESGCLLPSLPSDAVFDGTSGIGFICDLNDNIVAPWPTTSYPFPSSCNRSTKLPSLPTATSSQNGLFINTLVLPLLFTSILLPKRLL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2248 450 Pfam SPARK 82 235 IPR043891 -
Ssu3g2248 450 PANTHER GPI-ANCHORED PROTEIN 2 446 IPR040336 -
Ssu3g2248 450 PANTHER - 2 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2248 Ssu-Chr3 72416532 72422386 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2248 - - gmx:100780106 812.372