Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2245 atgGAAGAGTTTTGCCGGAAACTTGGCCGCTCCCCCACCCTCCGGCGGCGGATTCACCACCGCGTGTCCCTGCTCCGGCGGTGCCTCCTCCGCGTCCTCCACCGCATCTTCCTCTGCTCCGGGACGAAGGCCACCAATGCCACGTACAGCATGCTGCCGCCGGCATTGCCCTCTCCGCCTCCGCCGCCGGCGGGTTCCACGGGCGAGCCTGGCCGTGAAGAGGTGGAGGTTGCGTCGCCGGCGGTGTTTCACGCCCATGACTTCGACTCTGATTTGGTTTCCTTGAAGATCAGTTTGTTGGGTGACTGCCAAATTGGAAAAACCAGCTTTTTGGTGAAATATGTTGGGGATGAACAAGAGCAACAAAGGAATCAGAGGGAAGGGCTAAATCAGATGGACAAAACTTTGTTTGTTAAAGGGGCACGTATATCGTATCGCATCTGGGAAGTACAAGGTGATGGAAAATCAGAAGACCAAATTCCAATGGCTTGTAAGGACTCCGTGGCAATTTTGATTATGTTTGATCTAACAAGTCGCTGCACATTAAACAGTGTCCTAGGATGGTACAAAGAAGCCAGGAAATGGAATCagACGGCAATTCCAGTGTTGATAGGAACCAAGTTTGATGATTTCATTCAGCTCCCTATTGATTTGCAATGGACCATCGCCAGCGAGGCAAGAACATATGCAAAGGCCCTCAATGCCACTTTGTTCTTTTCCAGTGCAACCTACAACATCAACGTGAATAAGATCTTCAAGTTCATCACAGCCAAACTCTTTGACCTACCGTGGACAGTGGAAAGGAATCTAACTGTTGGGGAGCCCATCATTGACTTCTAA 840 0.5048 MEEFCRKLGRSPTLRRRIHHRVSLLRRCLLRVLHRIFLCSGTKATNATYSMLPPALPSPPPPPAGSTGEPGREEVEVASPAVFHAHDFDSDLVSLKISLLGDCQIGKTSFLVKYVGDEQEQQRNQREGLNQMDKTLFVKGARISYRIWEVQGDGKSEDQIPMACKDSVAILIMFDLTSRCTLNSVLGWYKEARKWNQTAIPVLIGTKFDDFIQLPIDLQWTIASEARTYAKALNATLFFSSATYNINVNKIFKFITAKLFDLPWTVERNLTVGEPIIDF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2245 279 PANTHER - 42 278 - -
Ssu3g2245 279 SMART rho_sub_3 97 261 IPR001806 GO:0003924|GO:0005525
Ssu3g2245 279 ProSiteProfiles small GTPase Rab1 family profile. 89 279 - -
Ssu3g2245 279 PANTHER MONOMERIC G-PROTEIN 42 278 - -
Ssu3g2245 279 Gene3D - 88 269 IPR027417 -
Ssu3g2245 279 Pfam Ras family 96 259 IPR001806 GO:0003924|GO:0005525
Ssu3g2245 279 MobiDBLite consensus disorder prediction 53 67 - -
Ssu3g2245 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 270 IPR027417 -
Ssu3g2245 279 MobiDBLite consensus disorder prediction 50 73 - -
Ssu3g2245 279 PRINTS Transforming protein P21 ras signature 237 259 - -
Ssu3g2245 279 PRINTS Transforming protein P21 ras signature 197 210 - -
Ssu3g2245 279 PRINTS Transforming protein P21 ras signature 136 158 - -
Ssu3g2245 279 PRINTS Transforming protein P21 ras signature 95 116 - -
Ssu3g2245 279 SMART rab_sub_5 95 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2245 Ssu-Chr3 72354430 72357009 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2245 K07976 - gmx:100780638 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2245 3 72354430 72357009 Ssu3g2245 3 72354430 72357009 ECH