Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2221 ATGGAAGCCTGCTGCTGCAACCTTGAAGTGGATGTAAATGGAGAAGAGACTTTCATGGTGGACAAGACTGTTATTACTCAGTACTCAAGCAAATTTGCTAAATTGTTTGGAAAGTCTAGTGGTGCCGCAGGAAAGCTTAAAGTAATATTCCATGATTTTCCAGGAGGTGCAGAAGGCTTTGAACTTATGTTAAAATTCTGTTACAACAATGGAACAGTGGACACAAGTCCTTCCAATTTGTTTCTCGCGCGTTGTGCTGCTGAATACATGGAAATGAAGGAACCTGTGGCTGATGTTTCTAACTTGTTGGAGCAGACAGAAAAGTCACTCCAAGAGATTAGCTATTGGACATGGTCAGAACTTTTGATTGCTTTGAAGCAGTGCCAGAATTTACTAGTTCCAGATTCTTCTGTGATGGTAGAGAGATGCTTGGATACTATTGTGGGGAGGCTGGTTTTGGCCAGTGAAGCAAGCCCTTGTCCATCAACTAGTTCCACAGATAGTTCTTGGATTCGGTTTTCATGTGACTCCAAGAGTACTGAGAGCATAAAGACAAGTTTCTCTCGTTTAACATGGTGGTTTGAAGATCTCCTATTTTTGAGTCCCTTGTTGGCAGCAATGTTGGTTAAGTCAATGCTTTCGCGTAAGATGGACCATGTTGTCATCAGCAGGTTTCTTCTGTGCTATCAGAAAGCCAAATTTTCCGCTGCTACTACAGATGAGAAGAGCAAGATCGTAGAAATGGTCATAGATATGCATTACAATATGGATCAAAGTTGTGTTCCTTGCAAGACTTTGTTTGGGATTCTGAGGGTTACTTTGGGTTTGAACATAAGCAAATGTAGCAGGAATAAGTTGGAGACTATGATTGGTTCCCAATTGGATCAAGCAACCTTGGACAATTTGCTTGTTCCATCTCCTTATGGAATAAACTACTTGTATGATGTGAACCTTGTTTTGAGATTTTTGAAAGCATTCCTGCGGAGAGGAAATGGTCTAGTCACTCCCATTCGGATGAGGAAAGTTGCTAGCTTAATAGATTTGTACATAGCAGAAATTGCCCCTGATCCTTGTTTGAAAACTTTAAAGTTCTTGGCTCTTGCCACAGCGATTCCAGATTCCGCAAGAGATTCTTATGATGAGCTCTACCATGCAATGGACATGTATCTTGAGGTACACACTCAATTGTCACAGGAAGAAAGATTGAAGATATGCTGTGGTTTAAATTATGAGAAGCTTTCACCTCAAGCTTGCCTACACCTTTCTCAGAACAAAAAATTTCCTTCAAAATCCGCAGTTCAGGCTCTTATCTCTCAAAAATCCAAGCTCAAAAATTTACTCCATGCCACTCCCACTACAACTTCATACAATGATTCACCCTGCAGCTCCAGTGGCGCTGCtcaaaagggaaagaaagacAAAACCAATGAACAGGTTGTGCTGTACGCTGGCGATTTTGATCTTTCGACAGATAATGAGAAACTCAAGGCACATTTACAAGGAATGCAGTGGAGGGTCATGGAATTAGAGAAATTCTGTAGGAAAATGCAAATCCAAATGGCAAGGATCACAAAATCAAAAGCATCAGGCCATAGTTATGCAAAATCTTTGCCCAAGCTCTGCTCATGA 1629 0.4064 MEACCCNLEVDVNGEETFMVDKTVITQYSSKFAKLFGKSSGAAGKLKVIFHDFPGGAEGFELMLKFCYNNGTVDTSPSNLFLARCAAEYMEMKEPVADVSNLLEQTEKSLQEISYWTWSELLIALKQCQNLLVPDSSVMVERCLDTIVGRLVLASEASPCPSTSSTDSSWIRFSCDSKSTESIKTSFSRLTWWFEDLLFLSPLLAAMLVKSMLSRKMDHVVISRFLLCYQKAKFSAATTDEKSKIVEMVIDMHYNMDQSCVPCKTLFGILRVTLGLNISKCSRNKLETMIGSQLDQATLDNLLVPSPYGINYLYDVNLVLRFLKAFLRRGNGLVTPIRMRKVASLIDLYIAEIAPDPCLKTLKFLALATAIPDSARDSYDELYHAMDMYLEVHTQLSQEERLKICCGLNYEKLSPQACLHLSQNKKFPSKSAVQALISQKSKLKNLLHATPTTTSYNDSPCSSSGAAQKGKKDKTNEQVVLYAGDFDLSTDNEKLKAHLQGMQWRVMELEKFCRKMQIQMARITKSKASGHSYAKSLPKLCS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2221 542 Pfam NPH3 family 191 418 IPR027356 -
Ssu3g2221 542 SMART BTB_4 6 107 IPR000210 GO:0005515
Ssu3g2221 542 MobiDBLite consensus disorder prediction 450 472 - -
Ssu3g2221 542 SUPERFAMILY POZ domain 5 103 IPR011333 -
Ssu3g2221 542 Gene3D Potassium Channel Kv1.1; Chain A 2 121 IPR011333 -
Ssu3g2221 542 ProSiteProfiles BTB domain profile. 6 70 IPR000210 GO:0005515
Ssu3g2221 542 Pfam BTB/POZ domain 6 106 IPR000210 GO:0005515
Ssu3g2221 542 PANTHER OS12G0117600 PROTEIN 12 542 IPR043454 -
Ssu3g2221 542 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 12 542 - -
Ssu3g2221 542 MobiDBLite consensus disorder prediction 450 469 - -
Ssu3g2221 542 ProSiteProfiles NPH3 domain profile. 191 442 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2221 Ssu-Chr3 71888983 71892146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2221 18 522 EF-hand Containing Proteins AT3G44820 26.408 3.96e-51 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2221 - - gmx:100784792 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2221 3 71888983 71892146 Ssu3g2221 3 71888983 71892146 ECH