Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2213 ATGGTTGTAGGAGGTGCAGTGCCTGATGAGGTGACTGTGATTTCTGTGCTTGGGGGTTGTAATCAAATCTCGGCATTGCGGTTGGGCGCGTCTGTTCACTTGTATGTTGTTAAGAGGGGCTATGGAGTGAATGTTGCTGTGGGAACTGCGCTTATTGGCATGTATGCTAACTGTGGGAGTTTGATTTGTGCATGTCGCGCGTCTGATGAGATGCCTGAGAAAAATTTGGCTGCTTGGACGGTTATGGTTACTGGATTTGGAATTCATGGGAGGGGAAGAGAGGCCATCtccattttttatgaaatgctAGGGAAAAATGTGACTCCAGATGAGGGCATTTTCACTGCAGTTTTATCGGCTTGTAGTCATTCTGGATTAGTGAATGAGGGTAAAGAGATTTTCTATAAAGTGACTAGAGACTATAATGTGGAGCCCGGACCCACTCATTATTCATGTTTAGTGGATCTACTTGGCAGAGCAGGGTACTTAGATGAAGCATATGCAGTTATAGAGAACATGAAATTGAAACCTAATGAGGATGCATGGACTGCTCTTCTTTCTGCTTGCAGATTACATCGGAATGTCAAGTTAGCGGAGATCTCAGCGCAGAATCTTTTTGAAATGAATCCAAATGGAGTGAGTGGCTATGTTTGCCTTTCCAACATCTATGCTGCTGAGAGACGGTGGAAGGATGTTGAAAATGTGAGGGCATTGGTGAAAAAGAGGAGATTGAGGAAACCACCTAGTTACAGTTTTGTTGAGCTAAATAAGATGGTTCATCAATTTTTTGTCGGAGATACTTCCCACCAACAGTCTGATGATATTTATGCCAAATTGAAAGACTTGAATGAGCAGCTCAAGAAAGCTGGCTACAAGCCTGACACTAGTTCAATTCTCTACGATGTTGAGGAAGAAATAAAGGAGAAGATGCTTTGGGATCATAGCGAGAGGTTGGCACTTGCTTTTGCTCTTATTAACACTGGTCCAGGGACCACAATCAGAATAACCAAGAATCTTCGTGTGTGTGGAGATTGCCACACTGcaataaaaatgatttctaaGCTCACAAATCAGGAGATTATCATGCGAGATATTTGTAGGTTTCACCATTTTAGAGATGGCCTATGCTCATGTGGTGGATATTGGTGA 1149 0.4195 MVVGGAVPDEVTVISVLGGCNQISALRLGASVHLYVVKRGYGVNVAVGTALIGMYANCGSLICACRASDEMPEKNLAAWTVMVTGFGIHGRGREAISIFYEMLGKNVTPDEGIFTAVLSACSHSGLVNEGKEIFYKVTRDYNVEPGPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDAWTALLSACRLHRNVKLAEISAQNLFEMNPNGVSGYVCLSNIYAAERRWKDVENVRALVKKRRLRKPPSYSFVELNKMVHQFFVGDTSHQQSDDIYAKLKDLNEQLKKAGYKPDTSSILYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTAIKMISKLTNQEIIMRDICRFHHFRDGLCSCGGYW 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2213 382 Gene3D Tetratricopeptide repeat domain 1 139 IPR011990 GO:0005515
Ssu3g2213 382 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 356 - -
Ssu3g2213 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Ssu3g2213 382 PANTHER - 1 356 - -
Ssu3g2213 382 TIGRFAM PPR: pentatricopeptide repeat domain 78 111 IPR002885 -
Ssu3g2213 382 Pfam E motif 192 254 IPR046848 -
Ssu3g2213 382 Pfam E+ motif 259 282 IPR046849 -
Ssu3g2213 382 Gene3D Tetratricopeptide repeat domain 140 318 IPR011990 GO:0005515
Ssu3g2213 382 Pfam PPR repeat 114 137 IPR002885 -
Ssu3g2213 382 Pfam PPR repeat 78 107 IPR002885 -
Ssu3g2213 382 Pfam PPR repeat 149 174 IPR002885 -
Ssu3g2213 382 Pfam DYW family of nucleic acid deaminases 290 382 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2213 Ssu-Chr3 71725103 71726251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2213 12 382 Glycoside Hydrolase AT3G49170 41.600 4.36e-105 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2213 - - gmx:100817006 709.138