Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2208 ATGGAAACAAGATCTGCAAAGCGCAAGAAGATGGCTCAAATAGAAGAGAACGATGCTAAATCAGCCACGGATCGGATCAGTGATCTCCCTGATGCAGTTCTTCATCATATCCTTTTCCTTCTCCCCATAAAATGTGTTGCACAAATGAGCATTCTTTCTAAGAGATGGAAATTTCTTTGGTCCACTTTTCCCGACCTTGACTTCAGAACCCTTAACCCATTTGAAATCTCTTCCAAAAACGTTAAATTTTTGGAGTTTGAAAAGCCAAGACAACCTTTGGATTCATCACGAATGGATTTCATCACCCAAGTTCTCTCTATCCGTGACAAGCACTCGGACATTAGGGTTCTTTGTTTTCGTGCGCGTTTGAGTTTTTCACGACTAAATAGTTTGATCCGTAGGGCCATTAGGCATAACGTTAGAGAACTTGATATTGAAGCGGTCGCTGCAGTGTGTACAGATGATTACTTCAACTTTCCTAGATGTGTTATTGGGAGCGAATCTCTAAGGGTTTTGAAACTAAAATCAGGTTTTCGTTTGCCTCCATCATCAGTTATGAGACAAGGGTTCCAATCTCTACAAACCTTGTCTCTTTCCCTAGTCATTTGGAACAACCAACCTTCTCTACCTGATTTGTTCTCTGAATCATCCTTCCCTGTCCTTAGAAATCTGAACCTTGATACGTGCTTCGGGTTAAAGTATCTTCACGTTGGATGTAGGGCTCTTGAAGATTTGAACCTAGAGAAATGTTATGACCTAGAAGGTTTGGATATCTCATGTGCAAAGCTCGAAAGAATGAGATTGATGAAGTGTTTTGATCCCCATTGTGACAAGAGTTGGGTAAAAATCAATGCACCAAAGCTTGAGCATTTGTGTTGGCAACACAATGCAGTCACTGACACGACTATTTTTGAGGCTTCAAATTTGTTGCACGAGGTCACCGTTGGTTTCTTTATATTGACTAGAGATAATACGCAGGGTAAGCTTCAAAGTGCTGTTGATTTTTTGTCTGGACTGTCTCATGCGCGTTCCTTGTCTCTTGAAAGGCAAACTATTGAGATTCTATCAAATAATCACCTCCTTTTTCAGCCattttataatcttaaatatttagAGCTGCATACTGGTTTCAACAAAAGTAATGTTCCCGGATTGGCATGCCTATTCAAGAGCTCTCCCATTCTCAACACACTGATTCTCAAGATCATTCACGAATATAggattgaaagaaaaGCATGGAATAGAGACTTATGGGACATGACTATCACCGAGGGAGAGCAGTATTGGGAGTCTCAGATCCGAACCCTGGAGTCTTTTCTACAACACTTGAAAGTGGTGAAAATTCACGGGTTTCTTGATTATGAGAATGAAGTGGCACTTGCAAAGTTTCTCCTCAAGCATGGGAAGGCCATAGAAGAAATGATATTACACACAGGACATTGCAATGCAAGAGATACTCTTAGGAGACAAAAAATAAGGTCACAAATGATGGGATTTTCTTGGGCTTCCTCTAATGCAAAAGTGGCATTTCAGTAG 1536 0.4004 METRSAKRKKMAQIEENDAKSATDRISDLPDAVLHHILFLLPIKCVAQMSILSKRWKFLWSTFPDLDFRTLNPFEISSKNVKFLEFEKPRQPLDSSRMDFITQVLSIRDKHSDIRVLCFRARLSFSRLNSLIRRAIRHNVRELDIEAVAAVCTDDYFNFPRCVIGSESLRVLKLKSGFRLPPSSVMRQGFQSLQTLSLSLVIWNNQPSLPDLFSESSFPVLRNLNLDTCFGLKYLHVGCRALEDLNLEKCYDLEGLDISCAKLERMRLMKCFDPHCDKSWVKINAPKLEHLCWQHNAVTDTTIFEASNLLHEVTVGFFILTRDNTQGKLQSAVDFLSGLSHARSLSLERQTIEILSNNHLLFQPFYNLKYLELHTGFNKSNVPGLACLFKSSPILNTLILKIIHEYRIERKAWNRDLWDMTITEGEQYWESQIRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKHGKAIEEMILHTGHCNARDTLRRQKIRSQMMGFSWASSNAKVAFQ 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2208 511 SUPERFAMILY RNI-like 124 420 - -
Ssu3g2208 511 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Ssu3g2208 511 Pfam FBD 437 476 IPR006566 -
Ssu3g2208 511 Pfam F-box domain 26 61 IPR001810 GO:0005515
Ssu3g2208 511 Gene3D - 9 66 - -
Ssu3g2208 511 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 21 456 - -
Ssu3g2208 511 SMART 9598neu4hmm 437 511 IPR006566 -
Ssu3g2208 511 SUPERFAMILY F-box domain 23 69 IPR036047 GO:0005515
Ssu3g2208 511 Gene3D Ribonuclease Inhibitor 77 401 IPR032675 -
Ssu3g2208 511 PANTHER F-BOX PROTEIN-LIKE 21 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2208 Ssu-Chr3 71666065 71669188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2208 22 480 EF-hand Containing Proteins AT5G41840 22.568 3.89e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2208 - - gmx:100819136 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2208 3 71666065 71669188 Ssu3g2208 3 71666065 71669188 ECH