Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2207 ATGCCTGAGGCTCCTAGCCACTACCTTTGCATCAAGCCAAATGGCAaacttgatgatgatgatggtgctAGTAATACTAGCATCATCAAGCACAACAATAAGAAAGCACTAAAATACATTGAGGATGTTACTAGCAACACTGATGAAGTTCAAAAAAGGGTCCTTGCTGAGATCCTTTCTTCTAGTGCACATGTTGAGTACCTTCAACGCCATGGCTTAGAGGGGCGCAGAGATAGAGATACTTTTAAGAAGATCATGCCTGTGGTGACATATGAGGATTTAAAGCCAGATATTGATCGTGTAGCCAATGGTGATACCTCCCCAATTTTATGCTCCAAACCTATTTCTGAGTTCCTCACTAGCTCTGGAACTTCTGGTGGGGAGAGGAAATTGATGCCAACCATAGAAGATGAGCTAGAGCGGAGATCACTGCTGTATAGCCTCTTGATGCCAGTGATGGACCAATTTGTTTCCGGTTTGGACAAAGGCAAGGGCATGTACTTTTTGTTCATAAAATCAGAAGCCAAGACCCCTGGGGGACTCCTAGCACGTCCCGTTTTAACCAGCTACTACAAGAGCTCACACTTCAAGGACAAAACACACGGATTTGACCCCTACACAAACTACACTAGCCCCATTGAGACCATTCTCTGCCTAGACTCTTATCAAAGCATGTATTCCCAAATGCTTTGTGGACTTTTTCAAAACGAGCAAGTTCTTCGTGTTGGGGCTGTTTTTGCCTCCGGTTTCATCCGTGCCATTAAGTTCTTAGAAAAGCATTGGATCTCTTTGTGCCATGACATAAGAAATGGCACCATAGACCCTGAAATCACTGACCCATCCGTGAGAGAGGCCATCATGAAGATACTCAAACCAAACCCCAAGCTTGCGGATTTCATAGAATTTGAGTGCAACAAGGGGTCATGGAAGGGGATCATTACTAGGCTGTGGCCAAACACCAAGTATGTTGATGTTATTGTTACTGGAACTATGTCTCAGTATATCCCAATATTGGATTACTATAGCAATGGTCTCCCTCTTGTTTGCACCATGTATGCTTCGTCCGAGTGTTATTTTGGCCTCAACTTGAACCCTTTGTGTGACCCGAGTGAGGTGTCTTACACCCTCATTCCCACCATGGCCTACTTTGAGTTCTTGCCCCTCAATAAGATGAAGGGACATGTCAATTCAATTTCTCACCCTGAGCAAGAGCGTTTGGTTGATCTTGTGGATGTGGAGTTGGGTCAAGAATATGAGCTTGTGGTCACCACTTATGCAGGGCTTTATAGGTACCGAGTTGGTGACATACTCCGTGTAGCAGGATTCAAGAACAAGGCTCCTCAATTCAACTTTATATGCCGAAAGAATGTGGTTTTGAGCATTGATTCGGACAAAACCGATGAGGTTGAGCTACAAAATGCTGTGAAGAATGGAGCCAACCATCTTGCACAATTTGGTGCATCACTCACAGAATACACAAGCTGTGCTAACACGTCCACAATACCGGGCCACTATGTGCTATACTGGGAAATTAGCATGAATAATGATCAAACCCCAATTCCCGGTTCTGTTTTTGAGGAGTGTTGCTATGCAGTTGAAGGGTCTCTCAACAGCGTGTATCGACAAGGCAGGGTGTCAGAGTCCATCGGACCATTGGAAATCAAGATAGTGGAAAATGGAACGTTTGACAAGCTTATGGACTTTGCTCTTAGCCAGGGTGCATCCATAAATCAGTACAAGACACCTCGTTGTGTGAAATATGCTCCCATTGTTGAGCTTCTTGACTCCAAGACAGTTTCCAATTTCTTCAGTCCAAAGTGCCCACAGTGGGTTCCTGGTCACAAGAAGTGGTGCACCCTTGacttgaaataa 1872 0.4396 MPEAPSHYLCIKPNGKLDDDDGASNTSIIKHNNKKALKYIEDVTSNTDEVQKRVLAEILSSSAHVEYLQRHGLEGRRDRDTFKKIMPVVTYEDLKPDIDRVANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEDELERRSLLYSLLMPVMDQFVSGLDKGKGMYFLFIKSEAKTPGGLLARPVLTSYYKSSHFKDKTHGFDPYTNYTSPIETILCLDSYQSMYSQMLCGLFQNEQVLRVGAVFASGFIRAIKFLEKHWISLCHDIRNGTIDPEITDPSVREAIMKILKPNPKLADFIEFECNKGSWKGIITRLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPLCDPSEVSYTLIPTMAYFEFLPLNKMKGHVNSISHPEQERLVDLVDVELGQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNGANHLAQFGASLTEYTSCANTSTIPGHYVLYWEISMNNDQTPIPGSVFEECCYAVEGSLNSVYRQGRVSESIGPLEIKIVENGTFDKLMDFALSQGASINQYKTPRCVKYAPIVELLDSKTVSNFFSPKCPQWVPGHKKWCTLDLK 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2207 623 Pfam GH3 auxin-responsive promoter 40 586 IPR004993 -
Ssu3g2207 623 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 25 617 IPR004993 -
Ssu3g2207 623 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE 25 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2207 Ssu-Chr3 71632152 71636213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2207 26 604 EF-hand Containing Proteins AT1G23160 49.830 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2207 K14487 - gmx:100783196 1152.12