Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2206 ATGGCCGGAATTGGCAAGGGAATTGGCTTCGAAGACTTGTTACCCGTGATGGCCAGCAAGCTTGGTGGGGAGGGGCTAATAAAAGAGCTATGCAACGGGTTCCAGTTGCTGGTGGACAAAGAGAAAGGGGTGATCACGCTGGAGAGTTTGAGGGAAAACGCAGCGCTTTTGGGTCTGCAGGACATGAAGGAGGACGAGCTTGTGAGCATGATGAGGGAAGGGGACCTTGATGGAGATGGGGCACTCACCCAGATGGAGTTCTGCGTTTTGATGTTCAGGTTGAGTccagagctgatggaggagtCGTGGTTTTGGCTTGAAGAGGCTCTCCAACGTGAACTCAACGACAACAGCAATGACTCTTCTGTTTAG 372 0.4919 MAGIGKGIGFEDLLPVMASKLGGEGLIKELCNGFQLLVDKEKGVITLESLRENAALLGLQDMKEDELVSMMREGDLDGDGALTQMEFCVLMFRLSPELMEESWFWLEEALQRELNDNSNDSSV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2206 123 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Ssu3g2206 123 Gene3D - 8 123 - -
Ssu3g2206 123 SUPERFAMILY EF-hand 7 106 IPR011992 -
Ssu3g2206 123 SMART efh_1 66 94 IPR002048 GO:0005509
Ssu3g2206 123 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 1 118 - -
Ssu3g2206 123 Pfam EF-hand domain pair 41 93 IPR002048 GO:0005509
Ssu3g2206 123 PANTHER CALCIUM-BINDING PROTEIN KIC 1 118 IPR044205 GO:0005509
Ssu3g2206 123 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2206 Ssu-Chr3 71598344 71598715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2206 10 114 EF-hand Containing Proteins AT4G27280 63.208 1.50e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2206 K24345 - gmx:100527206 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2206 3 71598344 71598715 Ssu3g2206 3 71598344 71598715 ECH