Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2202 ATGACAGCAAAGTTCACCAAACTAGGGCCTCTTAGGAAGAGCCAGTCTCTTCAAAGTGGGCTTGACCAAGGTATAAGGGAAGGTGATGAAGATCTGGGGTTGTCTTGTGATGGTGCCAAAAGCAACAATGAGTCAACAATTTCAATTTGCAGACAGTATCGTGATGCAAACCCCATTGATCAGTATGGAAATAATCCAAACTTCGAGTCTCAAGTCAGTTCAGGTCTTGCAAATGATGGCTCATTTTTTACAATCGGAGATCCAGCACCTTCAGATAAAGATGCCAGGGAAATTTCTGATACTCCATTATCTGGTGAATTTGCTGGTGACATTGCTGACCAGACTTCTGTTCCTGGTACCCTATCTCTAAGGAAGTCATGTTCTTTACCCAATATCAGAGCTTCTATACTTTATTCTGAAAAAGATGCTTTTAAATGTGCATTGTCATTGTCAAGATCTTCGGATGATCTTCATGCTTTGCACATGAGGCAGAAAGAGGTATACACCAATGAGTTTGATGATCACATAAGGGGAGatcaagaaagagagaatgaCATGGGAAAAACTGAAGATGGTCATATGGACAGTTTCTTTGATGATGGTTTTGATTCTTATCTGCTTTCTGGTTCAGCAAAAGACTGGGTAATGCCAATTACAGATGATACAAGTGATGTCATAACCCTTCAAGGAGATTCCCCAGTTGTCCACGTGGGTGAGTTTCCTAACAAGGATTTTAAGGTTAAGCGCATTGAGGATTGGGTAATAGGTCTGCAGCATTGTGGACCACCTCTAGAGGAAACAAATGAATTGCCTGAAGTTATTGAACCTTTAGTTGCTGTTAACACAGTAAATGGTGTGACTGCTGCAAGTGTGGATCATAAGGTCACTCCAGGAATGGAAGCAGCTAAAAGATATATATCTTCTCTGAGTGCTAATGCCACTGCTGCTCAGCTGGCAAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTGAAAGTGCTCAATTTGGCTGGAAATTCCATTGTGAGGATAACTGCTGGTGCTCTTCCTCGTGGACTTCACGCGTTGAATTTGTCTAGAAACAAGATCTCCGCTATAGAAGGATTACGCGAACTTACACGGCTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGCCTTGCATCCTGCTCATCTCTGAAGGAGCTGTACCTGGCTGGAAACAAGATCAGTGAAGTAGAGGGTCTGCACCGCCTCTTGAAGCTAAGTATCCTCGATCTCCgttttaacaaaatttcaacaGCCAAATGTCTAGGCCAACTTGCTGCCAACTATAATTCCTTGCAAGCTATTAACTTGGATGGGAACCCAGCCCAAAAAAATGTTGGAGATGAACAGATGAAGAAATATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAATCGGCAGCCTATCAAACTGAGCACTTTGAAGGATGGAGGAGAACGTTCGGTTCGGTTAGGAATGAATTCCCATCAGTTTGATCGCGGCCTTAGAGCAGATCGCAAGACCACCAGAAAGGGCAGCCAAGGTGTTGTAGCCACACGGAGGCCATCAACCACTTCCACTCATGCTCGCAGAAGTGGGGACTCACCAAAATTGTCCAAAGGCAAGCAAGCTCTCCTGCCACCATCTAGAACCAAAGTATCAACCCAAAGTCGCCATCATTTTGATGCTCCCAGCAAAGTGTTGAACCTCACATCAGAGCACTCCATGCGCAAGAGTCGCAGTGAGGGAAATTTTGGAGCTCTGTGA 1803 0.4348 MTAKFTKLGPLRKSQSLQSGLDQGIREGDEDLGLSCDGAKSNNESTISICRQYRDANPIDQYGNNPNFESQVSSGLANDGSFFTIGDPAPSDKDAREISDTPLSGEFAGDIADQTSVPGTLSLRKSCSLPNIRASILYSEKDAFKCALSLSRSSDDLHALHMRQKEVYTNEFDDHIRGDQERENDMGKTEDGHMDSFFDDGFDSYLLSGSAKDWVMPITDDTSDVITLQGDSPVVHVGEFPNKDFKVKRIEDWVIGLQHCGPPLEETNELPEVIEPLVAVNTVNGVTAASVDHKVTPGMEAAKRYISSLSANATAAQLANHGLVVIPFLSAFVSLKVLNLAGNSIVRITAGALPRGLHALNLSRNKISAIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLQAINLDGNPAQKNVGDEQMKKYLQGLLPHLVYYNRQPIKLSTLKDGGERSVRLGMNSHQFDRGLRADRKTTRKGSQGVVATRRPSTTSTHARRSGDSPKLSKGKQALLPPSRTKVSTQSRHHFDAPSKVLNLTSEHSMRKSRSEGNFGAL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2202 600 ProSiteProfiles Leucine-rich repeat profile. 356 377 IPR001611 GO:0005515
Ssu3g2202 600 MobiDBLite consensus disorder prediction 560 584 - -
Ssu3g2202 600 SMART LRR_typ_2 421 443 IPR003591 -
Ssu3g2202 600 SMART LRR_typ_2 376 399 IPR003591 -
Ssu3g2202 600 SMART LRR_typ_2 332 355 IPR003591 -
Ssu3g2202 600 MobiDBLite consensus disorder prediction 504 600 - -
Ssu3g2202 600 Gene3D Ribonuclease Inhibitor 282 472 IPR032675 -
Ssu3g2202 600 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Ssu3g2202 600 MobiDBLite consensus disorder prediction 524 544 - -
Ssu3g2202 600 SMART LRR_sd22_2 376 398 - -
Ssu3g2202 600 SMART LRR_sd22_2 421 445 - -
Ssu3g2202 600 SMART LRR_sd22_2 354 375 - -
Ssu3g2202 600 SMART LRR_sd22_2 399 420 - -
Ssu3g2202 600 Pfam Leucine rich repeat 334 389 IPR001611 GO:0005515
Ssu3g2202 600 PANTHER BNAA09G01440D PROTEIN 76 599 - -
Ssu3g2202 600 PANTHER NISCHARIN RELATED 76 599 - -
Ssu3g2202 600 MobiDBLite consensus disorder prediction 1 26 - -
Ssu3g2202 600 ProSiteProfiles Leucine-rich repeat profile. 401 422 IPR001611 GO:0005515
Ssu3g2202 600 SUPERFAMILY Outer arm dynein light chain 1 325 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2202 Ssu-Chr3 71550978 71553053 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2202 334 458 Receptor kinase-like Gene Family AT4G39400 35.036 9.65e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2202 - - gmx:100790061 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2202 3 71550978 71553053 Ssu3g2202 3 71550978 71553053 ECH