Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2172 ATGGCTTTGCAACATGAAAACGGGTCGGATATTGACCCGAATCCTAGTGGGCTGGAGACAACAATGGCTTCCCAACACGAAAACGGGTCGGCTATTCACCCGAATCCTATCGGGGTGGAGACCCGGGAAGCGGAGGCTGAAAAGTTTGGGACTTTGGGTAGCGCTGTTCCTATTGAGGAGGGCGTGGAGAATATCACTTTGATGGATTCCTCTCTTTCAACTGGGGAGAACGGTGATAAGGATGATAGtgagagtgagagtgagagtgagagtgagagTGAAAGTGATAGTGAAAGTGAAAATTCAGAGTCTGAGAGTCCTTCTGATTCTGATTCTGGTAGTGGAAGCAGTAGTAGTAGCAGTAGTGATAgcgaagatgatgatgatgatgatgacgtgGAAGTTGAAGAAGGCGAGATAAGTGGTTCTGATGAGGAGAAGATGGTTAGTTGGAGCATGGctaatgatgatgaagatggtgatgatgatgcaGGAGGAGGACCCATCAGGTCAAAGAACGAGCTTCAgAATCTGCCTCCTGTTCCTCCAGTTGATGCGACTTTAGAACCGCACCATCAAATGCTGCCAGTGGGAATTGTTACATCGATTATTGGTGCTCAAGTCGTTGTGGAAGGAGTGGAGAAGCATGACCCTCTTAATGAGGGTTCTATTCTTTGGTTGACTGAAAGCCGAAAACCACTAGGTTTAGTTGATGAAATCTTTGGACCAGTGAAGAACCCTTATTATATTGTGAGATACAATTCTGAAAGTGAAGTCCCTGCGGGGATCCATGGGGGAACCTTGATCTCGTTTGTTCCAGAATTTGCTGATCACGTGCTTAATAACAATGATCTTTATAAGAAAGGGTACGATGCATCTGGCACAAATGATGAAGAGTTGTCTGATGAAATGGAGTTTTCAGATGATGAGAAAGAGACTGAATACAAGAGGATGCAAAGAACAACAAAGAGAGGCATAAACGATCAAAATCATggcaagaaaaaaaacaatagaaagaAAGTTTCACCGAAAAAGCATGCAGCACCTACCATCCCTCATGCACCTGCAGCACCCCTGCTTGATCATGGAAATTGTCCTCCCTTTTCAGGCATTGGACAAGGTCTTTTGGGGGCAACTACCACAGTTCCGTCATTTCCATCCTTAAACGCAGTGCCAAATTTTGCTACAAATGGAGTTTGGACAAACGGAACAACATTTCCACATCAGCCACTGTCTGCCATACTTCCTAATGGATTTCCCACAAATGGCATATCATGGTACCCACAAAACACCCAAATTTCTCCTCAGTTGTCTATGCCAGGAATTCCATTTCAACAGCAATTACATCCTAATCAGGGATCTCTTTCCACAACTATGCTACCTGGGATGCAGCCCAATATGTTTGCTCAATCCATGTATCCAACCGGGCTTGTTGGTCAAAACCAAATGACATTTGGGATGGGGTCACCCTTCCCACAGATTCAGCCACCTATTTCTGCTGCACAACAGGGTTTTCCATCCATTGAATTTCATTCAGAAAGAAACCTTAATTTGCATTCTAATACTATTTCTGGTGCGCCCCCTCCGTTTCATCCACGTCCTTCTGCTAATCGTGGGAGAAAAACATTTCATGGTGCTGGTAGGAAAGGGTGGCGACCAGCCAAGTGA 1668 0.4197 MALQHENGSDIDPNPSGLETTMASQHENGSAIHPNPIGVETREAEAEKFGTLGSAVPIEEGVENITLMDSSLSTGENGDKDDSESESESESESESDSESENSESESPSDSDSGSGSSSSSSSDSEDDDDDDDVEVEEGEISGSDEEKMVSWSMANDDEDGDDDAGGGPIRSKNELQNLPPVPPVDATLEPHHQMLPVGIVTSIIGAQVVVEGVEKHDPLNEGSILWLTESRKPLGLVDEIFGPVKNPYYIVRYNSESEVPAGIHGGTLISFVPEFADHVLNNNDLYKKGYDASGTNDEELSDEMEFSDDEKETEYKRMQRTTKRGINDQNHGKKKNNRKKVSPKKHAAPTIPHAPAAPLLDHGNCPPFSGIGQGLLGATTTVPSFPSLNAVPNFATNGVWTNGTTFPHQPLSAILPNGFPTNGISWYPQNTQISPQLSMPGIPFQQQLHPNQGSLSTTMLPGMQPNMFAQSMYPTGLVGQNQMTFGMGSPFPQIQPPISAAQQGFPSIEFHSERNLNLHSNTISGAPPPFHPRPSANRGRKTFHGAGRKGWRPAK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2172 555 MobiDBLite consensus disorder prediction 81 105 - -
Ssu3g2172 555 Gene3D Probable tRNA pseudouridine synthase domain 166 271 IPR038664 -
Ssu3g2172 555 MobiDBLite consensus disorder prediction 106 121 - -
Ssu3g2172 555 MobiDBLite consensus disorder prediction 290 361 - -
Ssu3g2172 555 MobiDBLite consensus disorder prediction 9 31 - -
Ssu3g2172 555 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 12 548 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Ssu3g2172 555 Pfam Gar1/Naf1 RNA binding region 196 261 IPR007504 GO:0001522|GO:0042254
Ssu3g2172 555 MobiDBLite consensus disorder prediction 518 555 - -
Ssu3g2172 555 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 12 548 - -
Ssu3g2172 555 SUPERFAMILY Translation proteins 194 257 IPR009000 -
Ssu3g2172 555 MobiDBLite consensus disorder prediction 1 181 - -
Ssu3g2172 555 MobiDBLite consensus disorder prediction 310 332 - -
Ssu3g2172 555 MobiDBLite consensus disorder prediction 122 141 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2172 K14763 - gmx:102660668 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2172 3 70764862 70767205 Ssu3g2172 3 70764862 70767205 ECH