Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2168 ATGGACACGCCATGGTCCACACCATACGATAATTTCACTACCTATAACTGCATCAAGTTTTTAGCTGAACAGATATCAAGTTATCAGCCTTTTAGAGCAACAAACAAGTGGTGCTGCAAAATTTATGCTGTGATGGGTGTTGAAGCCACAGCTCCAATGGTGGCACCATTTAATGTCCAGAGACCAGACCATTGGAAGCATTTTGATGATTCTGTGAATGCAGTGTCTTTTGGGTTTGTTGCCACTGCCATCCTCATTTCTATGTTTCTTCTTCTGGCTATCTTTGAGAGGTTTCTTAGGCAAAGATCAAGTGAAGCTAATGTTGCAACTCCAATAGATCTTGAACACCAAATGGACTTTGGAGGAAAGTTGGAAAATCTATCACCCAAGATGACCATTTATGGAAGAGGCGTATTAGTGTTGATGCCTGGAGAGCAGATTCCTTCATTCATTGCACTTCCTGCTCCTGCACCATGTCGCCCCGAGCCCACCTCATGGCCTATTCAACATAACTCATACTTCCCGGCACCTCTAGCATCAATGACAGGATATAATCTAACAAGGAACTAG 570 0.4316 MDTPWSTPYDNFTTYNCIKFLAEQISSYQPFRATNKWCCKIYAVMGVEATAPMVAPFNVQRPDHWKHFDDSVNAVSFGFVATAILISMFLLLAIFERFLRQRSSEANVATPIDLEHQMDFGGKLENLSPKMTIYGRGVLVLMPGEQIPSFIALPAPAPCRPEPTSWPIQHNSYFPAPLASMTGYNLTRN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2168 189 PANTHER - 48 171 - -
Ssu3g2168 189 PANTHER CTTNBP 2 AMINO-TERMINAL-LIKE PROTEIN 48 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2168 Ssu-Chr3 70694137 70696823 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2168 - - ccaj:109799152 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2168 3 70694137 70696823 Ssu3g2168 3 70694137 70696823 ECH